View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_low_10 (Length: 467)
Name: NF13201_low_10
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 29912830 - 29913259
Alignment:
| Q |
18 |
cttattgtatgcttggtcatttagatacaatattatataaattttggtttgtcgttcaaaaagaaatataaagattttgatttatcttctttttgtatca |
117 |
Q |
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| T |
29912830 |
cttattgtatgtttggtcatttagatacaatattatataaattttggtttgtcgttcaaaaagaaatataaagattttgatttatcttctttttgtatca |
29912929 |
T |
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| Q |
118 |
tggctattgggaaggagcgtgagtttaaagtttcaacaactcatgcaccatgtacaaaaatgttttggttgagggatacccctttaaagaatgttatagt |
217 |
Q |
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| T |
29912930 |
tggctattgggaaggagcgcgagtttaaagtttcaacaactcatgcaccatgtacaaaaatgttttggttgagggatacccctttaaagaatgttatagt |
29913029 |
T |
|
| Q |
218 |
tgatggttctaacataaatttatattattagacaatgaagacataaatgcttatgactaaacggttactcatcacatatgcttatttatctatgttgagt |
317 |
Q |
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| T |
29913030 |
tgatggttctaacacaaatttatattattatacaatgaagacataaatgcttatgactaaacggttactcatcacatatgtttatttatctatgttgagt |
29913129 |
T |
|
| Q |
318 |
agcta-tttgtttataatatgtactatgttattcttactccttgcattttattttcaccacacagaaaagaaaagaaaaataatgctcatataatgtcac |
416 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||| |
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| T |
29913130 |
agctagtttgtttataatatgtactacgttattcttactccttgcattttattttcaccacacagaaaagaaaa-aaaaacaatgcccatatattgtcac |
29913228 |
T |
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| Q |
417 |
tgtttattttattatctagtatgttggttta |
447 |
Q |
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| T |
29913229 |
tgtttattttattgtctagtatgttggttta |
29913259 |
T |
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