View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_low_11 (Length: 428)
Name: NF13201_low_11
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 33454826 - 33455228
Alignment:
| Q |
18 |
accaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacattgcatcttcacaattttaacttgatcaaggaata |
117 |
Q |
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| T |
33454826 |
accaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacattgcatcttcacaatttttacttgatcaaggaata |
33454925 |
T |
|
| Q |
118 |
tgtagacaaccaaagcaatcagtgtgcattgtataataccttccttaaaaacctatttatgcattttaactctcttgcttaaatgaaaatcttagaggcc |
217 |
Q |
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| T |
33454926 |
tgtagacaaccaaagcaatatgtgtgcattgtataataccttccttaaaaacctatttatgcattttaactctcttgcttaaatgaaaatcttagaggcc |
33455025 |
T |
|
| Q |
218 |
taatgatgtactgacaatatcataaatgaaagcagaactcgatcaaaaagtatcaacgacattttcttcagtcttacaaatttcctttgtaagacctctc |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33455026 |
taatgatgtactgacaatatcataaatgaaagcaggactcgatcaaaaagtatcaacgacattttcttcagtcttacaaattttctttgtaagacctctc |
33455125 |
T |
|
| Q |
318 |
gtgttaagtcaaaactgaacctgcttctttagagtaaatatgacattactccgaatagaaccttttgtaatttatactgcatgcctatactcacagtatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33455126 |
gtgttaagtcaaaactgaacctgcttctttagagtaaatatgacattactccgaatagaaccttttgtaatttatactgcatgcctatactcacagtact |
33455225 |
T |
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| Q |
418 |
atc |
420 |
Q |
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||| |
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| T |
33455226 |
atc |
33455228 |
T |
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