View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_low_12 (Length: 388)
Name: NF13201_low_12
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 41744470 - 41744114
Alignment:
| Q |
18 |
ctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgttaaatgattaaactatcaagatgtttccggtgcagtttaga |
117 |
Q |
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| T |
41744470 |
ctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgtcaaatgattaaactatcaagatgtttccggtgcagtttaga |
41744371 |
T |
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| Q |
118 |
tcgattttcaaaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgattcatatttaataacattactatctcatttaaatcc |
217 |
Q |
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| T |
41744370 |
tcgattttcagaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgatccatatttaataacatgactatctcatttaaatcc |
41744271 |
T |
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| Q |
218 |
atattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagtnnnnnnnnngattatattataaagtattaaacctattgatgtta |
317 |
Q |
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| T |
41744270 |
atattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagt-aaaaaaaagattatattataaagtattaaacctattgatgtta |
41744172 |
T |
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| Q |
318 |
aggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744171 |
aggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatg |
41744114 |
T |
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