View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13201_low_13 (Length: 367)
Name: NF13201_low_13
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_13 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 2838593 - 2838943
Alignment:
| Q |
17 |
catggtctgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838593 |
catggtctgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataact |
2838692 |
T |
|
| Q |
117 |
ttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttca |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838693 |
ttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttca |
2838792 |
T |
|
| Q |
217 |
attaacctctcatattgtctcatttccatttccattgacgctttctcctcttgcatacgcaatatcatagccatggcgtcatctgcagcagtagcagctg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838793 |
attaacctctcatattgtctcatttccatttccattgacgctttctcctcttgcagacgcaatatcatagccatggcgtcatctgcagcagtagcagctg |
2838892 |
T |
|
| Q |
317 |
cagttatctccttctctaactctagataaagagcagcataagcagctttct |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838893 |
cagttatctccttctctaactctagataaagagcagcataagcagctttct |
2838943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 107 - 367
Target Start/End: Original strand, 2842784 - 2843044
Alignment:
| Q |
107 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
206 |
Q |
| |
|
||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
|
| Q |
207 |
tctttcttcaattaacctctcatattgtctcatttccatttccattgacgctttctcctcttgcatacgcaatatcatagccatggcgtcatctgcagca |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||| || || |||||| |
|
|
| T |
2842884 |
tctttcttcaattaacctctcgtattgtctcatttccatttccattgatgatttctcctcttgcagacgcgatatcatagccatggcttcgtcagcagca |
2842983 |
T |
|
| Q |
307 |
gtagcagctgcagttatctccttctctaactctagataaagagcagcataagcagctttct |
367 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
2842984 |
gtagcagctgcagctctctccttctctagctctagataaagagcagcataagcagcattct |
2843044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
69 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University