View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13201_low_17 (Length: 248)

Name: NF13201_low_17
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13201_low_17
NF13201_low_17
[»] chr6 (15 HSPs)
chr6 (19-159)||(33390432-33390584)
chr6 (19-156)||(33402985-33403122)
chr6 (19-92)||(33642186-33642259)
chr6 (19-91)||(33306925-33306997)
chr6 (19-94)||(33265318-33265393)
chr6 (19-94)||(33274462-33274537)
chr6 (19-85)||(31566693-31566759)
chr6 (19-95)||(33059990-33060066)
chr6 (19-95)||(33288010-33288086)
chr6 (19-85)||(33412363-33412429)
chr6 (38-94)||(9169294-9169350)
chr6 (19-95)||(33360933-33361009)
chr6 (109-159)||(33642281-33642331)
chr6 (21-85)||(12781945-12782009)
chr6 (21-85)||(12786136-12786200)
[»] chr2 (1 HSPs)
chr2 (19-95)||(17438258-17438334)
[»] scaffold1749 (1 HSPs)
scaffold1749 (19-93)||(583-657)
[»] scaffold0428 (1 HSPs)
scaffold0428 (19-93)||(9344-9418)
[»] chr4 (4 HSPs)
chr4 (25-85)||(31020316-31020376)
chr4 (25-85)||(31030197-31030257)
chr4 (21-85)||(31489172-31489236)
chr4 (56-84)||(31476622-31476650)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 33390584 - 33390432
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatag------------nnnnnnnnnag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                      |    
T  33390584 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctatgtgataagtaagaaatttatagttttttttttttttttttttccg 33390485  T
Q  107 tagaaaatataagttgaagagatggtgcacgagtcctgaacagaaactcaaag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390484 tagaaaatataagttgaagagatggtgcacgagtcctgaacagaaactcaaag 33390432  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 33403122 - 33402985
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatagnnnnnnnnnagtagaaaatataa 118  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||          |||| ||||||||    
T  33403122 tcaagatggagggaagctctaaaacaagtggggagtatatctggttgggatctatgtgataagtaagtaatttatagtgttttttttgtagtaaatataa 33403023  T
Q  119 gttgaagagatggtgcacgagtcctgaacagaaactca 156  Q
    | |||||||||||||||||||||| | |||||||||||    
T  33403022 ggtgaagagatggtgcacgagtccaggacagaaactca 33402985  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 33642186 - 33642259
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaattta 92  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33642186 tcaagatggagggaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagtaattta 33642259  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 33306997 - 33306925
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaattt 91  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  33306997 tcaagatggagggaagctctaaaacatgtggggagtatctctggttgggatctacgtgataagtaagtaattt 33306925  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 33265393 - 33265318
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttata 94  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33265393 tcaaaatggagggacgctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagtaatttata 33265318  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 33274537 - 33274462
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttata 94  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33274537 tcaaaatggagggacgctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagtaatttata 33274462  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31566693 - 31566759
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31566693 tcaagatggagagaagctctaaaacaagtggcgagtatctttggttgggatctacgtgataagtaag 31566759  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33060066 - 33059990
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatag 95  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  33060066 tcaagatggagagaagctctagagcaagtggggagtatatctggttgggatctacgtgatgagtaagtaatttatag 33059990  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33288086 - 33288010
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatag 95  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  33288086 tcaagatggagggaagccctaaaacaagtggggagtatcgctggttgggatctatgtgataagtaagtaatttatag 33288010  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 33412429 - 33412363
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  33412429 tcaagatggagggaagctttaaaccaagtggggagtatctctggttgggatctacgtgataagtaag 33412363  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 9169350 - 9169294
Alignment:
Q  38 taaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttata 94  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  9169350 taaaacaagtggggagtatctctggttgggacctacgtgataagtaagtaatctata 9169294  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33361009 - 33360933
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatag 95  Q
    |||| |||||| ||||||||| | |||||||||  |||||||||||||||||||| ||||||||||| || ||||||    
T  33361009 tcaatatggagggaagctctagagcaagtgggggatatctctggttgggatctacatgataagtaagtaacttatag 33360933  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 33642281 - 33642331
Alignment:
Q  109 gaaaatataagttgaagagatggtgcacgagtcctgaacagaaactcaaag 159  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  33642281 gaaaatataaggtgaagagatggtgcacgagtctagaacagaaactcaaag 33642331  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 12782009 - 12781945
Alignment:
Q  21 aagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    |||| |||||||| ||||| | | |||||| | ||||||||| ||||||||||||||||||||||    
T  12782009 aagaaggagagaaactctacagctagtgggtaatatctctggctgggatctacgtgataagtaag 12781945  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 12786200 - 12786136
Alignment:
Q  21 aagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||||||||||||||||| | | |||||| | |||||| || ||||||||| || |||||||||    
T  12786200 aagatggagagaagctctacagctagtgggtaatatctccggctgggatctatgtcataagtaag 12786136  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 17438258 - 17438334
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttatag 95  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  17438258 tcaagatggagggaagctctaaagcaagtggggagtatcgctggttgggatctacgtgataagtaagtaatttatag 17438334  T

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Target: scaffold1749 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 657 - 583
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttat 93  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  657 tcaagatggagggaagctctaaaccaagtggggagtatcgctggttgggatctacgtgataagtaagtaatttat 583  T

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Target: scaffold0428 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 9418 - 9344
Alignment:
Q  19 tcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaagaaatttat 93  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  9418 tcaagatggagggaagctctaaaccaagtggggagtatcgctggttgggatctacgtgataagtaagtaatttat 9344  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 31020376 - 31020316
Alignment:
Q  25 tggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||| |||||||| | ||||||||||| ||||||||| |||||||| |||||||||||||    
T  31020376 tggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31020316  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 31030257 - 31030197
Alignment:
Q  25 tggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||| |||||||| | ||||||||||| ||||||||| |||||||| |||||||||||||    
T  31030257 tggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31030197  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 31489172 - 31489236
Alignment:
Q  21 aagatggagagaagctctaaaacaagtggggagtatctctggttgggatctacgtgataagtaag 85  Q
    ||||||||| |||||||| | ||||||||||| |||||| || |||||||| |||||||||||||    
T  31489172 aagatggagggaagctctgacacaagtggggaatatctcaggctgggatcttcgtgataagtaag 31489236  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 31476622 - 31476650
Alignment:
Q  56 tctctggttgggatctacgtgataagtaa 84  Q
    |||||||||||||||||||||||||||||    
T  31476622 tctctggttgggatctacgtgataagtaa 31476650  T

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