View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13201_low_2 (Length: 1080)

Name: NF13201_low_2
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13201_low_2
NF13201_low_2
[»] chr7 (2 HSPs)
chr7 (27-1061)||(31871139-31872171)
chr7 (97-184)||(23365284-23365372)
[»] chr5 (5 HSPs)
chr5 (27-188)||(14395249-14395410)
chr5 (96-184)||(13208700-13208789)
chr5 (93-184)||(2707443-2707533)
chr5 (121-184)||(34064854-34064917)
chr5 (48-137)||(13209247-13209334)
[»] chr3 (1 HSPs)
chr3 (96-184)||(42153169-42153258)
[»] scaffold0085 (1 HSPs)
scaffold0085 (96-184)||(39096-39184)
[»] chr8 (2 HSPs)
chr8 (93-184)||(29703435-29703526)
chr8 (133-184)||(5664264-5664315)
[»] chr4 (3 HSPs)
chr4 (124-184)||(56459730-56459790)
chr4 (96-186)||(4782517-4782608)
chr4 (119-185)||(30765435-30765501)
[»] chr1 (1 HSPs)
chr1 (124-184)||(19402353-19402413)


Alignment Details
Target: chr7 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 27 - 1061
Target Start/End: Complemental strand, 31872171 - 31871139
Alignment:
Q  27 acgtagagataagcttggtattggaacgcgaagaacaaagaagcgtatatgggttcatgaatttttatagaatagggtgaaacacatgttaagcttttaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  31872171 acgtagagataagcttggtattggaacgcgaagaacaaagaag-gtatgtgggttcatgaatttttatagaataggcagaaatacatgttaagcttttaa 31872073  T
Q  127 tctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataaataaataactcattctcaccagaaatgccctgtaatcgaata 226  Q
    |||||||||||||||||||||||||                      ||||||||||||||||||||||||||| || ||| ||||||| |||||| |||    
T  31872072 tctggtccattcattttttatctaa----------------------ttctcacataaataaataactcattcttactagatatgccctctaatcggata 31871995  T
Q  227 taaatttgtggataatagaaaatgacccttttatcctataacaacaacagcacaacgtatgtgagggaaaannnnnnnnnnnnn---ctcgataagagat 323  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||                |||||||||||||    
T  31871994 taaatttgtggataaaagaaaatgacccttttatcctataacaacaacaagacaacgtatgtgaggaaaaaaaaaaaaacatagagactcgataagagat 31871895  T
Q  324 tcattcatgggctctgaactctgaactctgaactcaacaactacacttcacactcagaactctgttccattctctcttcgctctgtaagtataatccttc 423  Q
    ||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871894 tcattcatgggctctgaactctgaactc-------aacagctacacttcacactcagaactctgttccattctctcttcgctctgtaagtataatccttc 31871802  T
Q  424 cttaatcgatttcctgtgtaaattgggtattttcctatagcgaattcaatttacttgttattggtaggtactttgatgcttctacatgaacataattggg 523  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871801 cttaatcgatttcctgtgtaaactgggtattttcctatagcgaattcaatttacttgttattggtaggtactttgatgcttctacatgaacataattggg 31871702  T
Q  524 catttttctggttctcgaatgaaatcacgtgggtc---tcactttaaatggggccaatttttcaaaatgcagaactaacatgaattccattc-------- 612  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||| |||||||||||||||            
T  31871701 catttttctggttctcgaatgaaatcacgtgggtcccgtcactttaaatggggccaatttttcaaaatgccgaactcacatgaattccattcaataaaag 31871602  T
Q  613 -gtgagtgttgttaacgaagtgtcgcgctggaatagcacttttgcagctgcgatagccgccggcccagtaaacacacaatagaattatgtcgcagacgag 711  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||    
T  31871601 agtgagtgttgttaacgtagtgtcgcgctggaatagcacttttgcagctgcgatagccg---gcccagtaaacatacaatagaattatgtcgcagacgag 31871505  T
Q  712 catagctcccgcgattctgcaattgcgcgttacagcaagctgcagaactgacaacatagctaataaaaatctctgcaat----------------tgcgc 795  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||                ||       
T  31871504 catagctcccgcgattctgcaattgcgctttacagcaagctgcagaactgacaacatagctaataaaaatctctgcaatgtgaaatttccccttttgaat 31871405  T
Q  796 gctattaacatattgttcatcttgcttcgttcaattctttgcagaaatcaattgcaacattgtaagactcagtcatctgtgtggcaatgatgatctcttc 895  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871404 gttattaacatattgttcatctttcttcgttcaattctttgcagaaatcaattgcaacattgtaagactcagtcatctgtgtggcaatgatgatctcttc 31871305  T
Q  896 cgtgcatgctacactttcgctatttcgtcaaagtaataatagcctaaggagcttaaaattttgtttacctttctcatcatctgctgcctctctctctgcc 995  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871304 cgtgcatgccacactttcgctatttcgtcaaagtaataatagcctaaggagcttaaaattttgtttacctttctcatcatctgctgcctctctctctgcc 31871205  T
Q  996 aacaacctttcccgcaagaaatcgaggcagcagccagttctctctgcattggagtatggtggagtc 1061  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871204 aacaacctttcccgcaagaaatcgaggcagcagccagttctctctgcattggagtatggtggagtc 31871139  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 23365284 - 23365372
Alignment:
Q  97 aatagggtgaaacacatgttaagctttt-aatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    |||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||| ||| |||||| || ||||||||||||    
T  23365284 aatagggtgagacacatgtgaagctttttaatctggttcattcattttttatctaaaggttggtaagtgttctcacaattctcacataa 23365372  T

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Target: chr5 (Bit Score: 134; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 14395249 - 14395410
Alignment:
Q  27 acgtagagataagcttggtattggaacgcgaagaacaaagaagcgtatatgggttcatgaatttttatagaatagggtgaaacacatgttaagcttttaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  14395249 acgtagagataagcttggtattggaacgcgaagaacaaagaagcgtaggtgggttcatgaatttttatagaatagggtgaaactcatgttaagtttttaa 14395348  T
Q  127 tctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataaataa 188  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  14395349 tctggtccattcattttttatccaaaggttgataagtgttctcaccattctcacataaataa 14395410  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 13208789 - 13208700
Alignment:
Q  96 gaatagggtgaaacacatgttaagcttttaatctggtccattcatt-ttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  13208789 gaatagggtgagacacatgtgaagcttttaatctggtccattcatttttttatctaaaggttgataagtgttctcaccattctcacataa 13208700  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 2707533 - 2707443
Alignment:
Q  93 atagaatagggtgaaacacatgttaagcttttaatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    |||||||||| | | |||||||| |  |||||||||||| ||||| |||||||||||||||||||||||  ||||| |||||||||| ||||    
T  2707533 atagaataggttaagacacatgtgagccttttaatctggaccatttattttttatctaaaggttgataa-ggttctcaccattctcatataa 2707443  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 34064854 - 34064917
Alignment:
Q  121 ttttaatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    ||||||||| | ||||| |||||| |||||||||||||||| |||||| |||||||||| ||||    
T  34064854 ttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataa 34064917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 13209247 - 13209334
Alignment:
Q  48 tggaacgcgaagaacaaagaagcgtatatgggttcatgaatttttatagaatagggtgaaacacatgttaagcttttaatctggtccatt 137  Q
    |||||| | ||||||||||||| || |  |||||||||||  || || ||||||||||| |||||||| |||||||||||||| ||||||    
T  13209247 tggaacacaaagaacaaagaagtgtgt--gggttcatgaaaattgattgaatagggtgagacacatgtgaagcttttaatctgatccatt 13209334  T

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Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 42153258 - 42153169
Alignment:
Q  96 gaatagggtgaaacacatgttaagcttttaatctggtccattcattttttatct-aaaggttgataactgttcttaccattctcacataa 184  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||    
T  42153258 gaatagggtgagacacatgataagcttttaatctggtccattcattttttatctaaaaggctgataagtgttctcaccattctcacataa 42153169  T

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Target: scaffold0085 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 39184 - 39096
Alignment:
Q  96 gaatagggtgaaacacatgttaagcttttaatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||  ||| || |||||| | | |||||||||||    
T  39184 gaatagggtgagacacatgtgaagtttttaatctggtccattcattttttatctaaagactgacaagtgttctcatcgttctcacataa 39096  T

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Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 29703435 - 29703526
Alignment:
Q  93 atagaatagggtgaaacacatgttaagcttttaatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    |||||||||| ||| |||||||| ||| ||||||| | | ||||| |||||| |||||||||||||||| |||||| |||||||||||||||    
T  29703435 atagaataggatgagacacatgtgaagtttttaatttagaccattaatttttgatctaaaggttgataagtgttctcaccattctcacataa 29703526  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 5664264 - 5664315
Alignment:
Q  133 ccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    ||||| |||||| |||||||||||||||| |||||| |||||||||| ||||    
T  5664264 ccatttatttttcatctaaaggttgataagtgttctcaccattctcatataa 5664315  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 56459730 - 56459790
Alignment:
Q  124 taatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    |||||||| ||||| |||||| |||||||||||||||| |||||| |||||||||| ||||    
T  56459730 taatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataa 56459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 4782517 - 4782608
Alignment:
Q  96 gaatagggtgaaacacatgttaagctttt-aatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataaat 186  Q
    ||||||| ||| |||||||| || ||||| |||||| ||| |||| ||||||| ||||  ||||||| |||||| |||||||||||||||||    
T  4782517 gaataggatgagacacatgtgaaactttttaatctgatcctttcaatttttatttaaaaattgataagtgttctcaccattctcacataaat 4782608  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 30765435 - 30765501
Alignment:
Q  119 gcttttaatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataaa 185  Q
    ||||||||||||| ||| |  ||||| |||||||||||||||| | |||| |||||||| |||||||    
T  30765435 gcttttaatctggaccacttgtttttgatctaaaggttgataagtattctcaccattcttacataaa 30765501  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 19402413 - 19402353
Alignment:
Q  124 taatctggtccattcattttttatctaaaggttgataactgttcttaccattctcacataa 184  Q
    |||||||| ||||| |||||| |||||||||||||||| |||||| |||||||||| ||||    
T  19402413 taatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataa 19402353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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