View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_low_7 (Length: 576)
Name: NF13201_low_7
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 96 - 559
Target Start/End: Original strand, 27444997 - 27445459
Alignment:
| Q |
96 |
caactacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattaaccttt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27444997 |
caactacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattgaccttt |
27445096 |
T |
|
| Q |
196 |
gtcatttcttttcggtaatcttcaaaatctggctcataacttgttcccactgaccaaacaaagttttcaaccaatctattccttgcaaagctcaactttt |
295 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27445097 |
gtcatttcttttcggtaatattctaaatctggctcataacttgttcccactgaccaaacaaagttttcaaccaatctattccttgcaaagctcaactttt |
27445196 |
T |
|
| Q |
296 |
catcaagttcagttattttccaccaccttaaaaatatagtacaatgttttcataaatattttcatattataccatagtgtttcaaaaatcaaaaagggga |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27445197 |
catcaagttcagttattttccaccaccttaaaaatatagtacaatgttttcataaatattttcatattataccatagtgtttcaaaaatc-aaaagggga |
27445295 |
T |
|
| Q |
396 |
attgcgaaagtaaatagtatattctatatattatattaccttgacgcatacttaagttcttcttgaaagttgctttgaacaatgttgaaatccattttag |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27445296 |
attgcgaaagtaaatagtatattctatatattatattaccttgacgcatacttaagttcttcttgaaagttgctttgaacaatgttgaaatcaattttag |
27445395 |
T |
|
| Q |
496 |
caaattcaagtaaaattggactcatgttttgctttctttcatatacattaatgaaccaatgagc |
559 |
Q |
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| T |
27445396 |
caaattcaagtaaaattggactcatgttttgctttctttcatatacattaatgaaccaatgagc |
27445459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 27326520 - 27326740
Alignment:
| Q |
100 |
tacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattaacctttgtca |
199 |
Q |
| |
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||||||||||||||||| |||||||| | |||||||||||| || ||||| ||||| ||||| ||||| || |||||| | | ||| |||||||||| |
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| T |
27326520 |
tacctatcaattgcttttgtgaagagctctagttcttccaatgtgccatacacatcgtacacatcatcaatgatggtaattaaggaattgacctttgtca |
27326619 |
T |
|
| Q |
200 |
tttcttttcggtaatcttcaaaatctggctcataacttgttcccactgaccaaacaaagttttcaaccaatctattccttgcaaagctcaacttttcatc |
299 |
Q |
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||||||| ||| ||||| ||||||| || | |||||||| | |||||||||||| ||||||||||||| |||||||||||||| || || | |
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| T |
27326620 |
aaacttttcgaaaataatcaaattctggcttgaaattagttcccacagtccaaacaaagttctcaaccaatctatctcttgcaaagctcaaattatctcc |
27326719 |
T |
|
| Q |
300 |
aagttcagttattttccacca |
320 |
Q |
| |
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|||| |||| |||||||||| |
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| T |
27326720 |
aagtgtagttcttttccacca |
27326740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 510
Target Start/End: Original strand, 27327176 - 27327253
Alignment:
| Q |
433 |
accttgacgcatacttaagttcttcttgaaagttgctttgaacaatgttgaaatccattttagcaaattcaagtaaaa |
510 |
Q |
| |
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||||||||| ||||||||| |||||||| | |||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
27327176 |
accttgacgtatacttaaggtcttcttggtataagctttgaagaatgttgaaatccaattgagcaaattcaagtaaaa |
27327253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 18843883 - 18843783
Alignment:
| Q |
100 |
tacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattaacctttgtca |
199 |
Q |
| |
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||||||||||| |||| |||||||| | |||||||||| ||| ||||| | ||||||||| ||||| | || |||||| | |||||| | |||||||| |
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| T |
18843883 |
tacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaattaatgcattgatctttgtca |
18843784 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
18843783 |
t |
18843783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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