View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_low_9 (Length: 476)
Name: NF13201_low_9
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 117 - 409
Target Start/End: Complemental strand, 3932675 - 3932380
Alignment:
| Q |
117 |
tatgtatcgatttactaaacacatgaattgttggcatttaaaagattaaaacatataagatcaaaagag--gagtacatttagatctcaaatcattacca |
214 |
Q |
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| T |
3932675 |
tatgtatcgattaactaaacacatgaattgttggcatttaaaagattaaaacatataagatcaaaagagaggagtacatttagatctcaaatcattaccg |
3932576 |
T |
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| Q |
215 |
gaccgatcttcatcggttgtcccaaatataaaataacaatgaaac-caagaaaattttcatctgcaaaataaataaattactaaccagtggttgcattca |
313 |
Q |
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| T |
3932575 |
gaccgatcttcatcggttgtcccaaatataaaataacaatgaaattcaagaaaattttcatctgcaaaataaataaattactaacgggtagttgcattca |
3932476 |
T |
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| Q |
314 |
cacacatactcaacgaagtaagaatgctaattagactannnnnnnnaaaggctgagagtaactttattaagaagaaacttagagcacaaaatatgt |
409 |
Q |
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| T |
3932475 |
cacacatactcaacgaagtaagaatgctgattagactattttttttaaaggctgagagaaactttattaagaagaaacttagagcacaaaatatgt |
3932380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 406 - 476
Target Start/End: Complemental strand, 3932005 - 3931935
Alignment:
| Q |
406 |
atgtggcaaggaaatcaaaattaggagaattttggagtccattatattaaacagaattcagggaatagaac |
476 |
Q |
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| T |
3932005 |
atgtggcaaggaaatcaaaattaggagaattttggagtccattatattaaacagaattcagggaatagaac |
3931935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 351
Target Start/End: Complemental strand, 3928331 - 3928063
Alignment:
| Q |
84 |
tagcgagagattaagttaaagctagagcaaagctatgtatcgatttactaaacacatgaattgttggcatttaaaagattaaaacatataagatcaa--a |
181 |
Q |
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| T |
3928331 |
tagcgagagactaagttaaagctagagtaaagctctgcctcgattaaccaaacacatgaattgttggcacttgaaggattaaaacatat---atcaaata |
3928235 |
T |
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| Q |
182 |
agaggagtacatttagatctcaaatcattaccagaccgatcttcatcggttgtcccaaatat-aaaataacaa---tgaaa-ccaagaaaattttcatct |
276 |
Q |
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| T |
3928234 |
acaggagtacactcagattccaagtctttaccaaactgatctatgccggttctcccaaatataaaaataacaagtctcaaatataagaaacttttcatct |
3928135 |
T |
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| Q |
277 |
gcaaaataaataaattactaaccagtggttgcattcacacacatactcaacgaagtaagaatgctaattagacta |
351 |
Q |
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| T |
3928134 |
ggaaa--aaaaaaattactaatcagtagttgca-tcacacacatactcaacaaattaagaatgctcattagacta |
3928063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 406 - 476
Target Start/End: Original strand, 38759367 - 38759437
Alignment:
| Q |
406 |
atgtggcaaggaaatcaaaattaggagaattttggagtccattatattaaacagaattcagggaatagaac |
476 |
Q |
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| T |
38759367 |
atgtggctaggaaatcaaaattaggagaattttggagtccattagattaaacagaattcagggaatagaac |
38759437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 22689333 - 22689362
Alignment:
| Q |
412 |
caaggaaatcaaaattaggagaattttgga |
441 |
Q |
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| T |
22689333 |
caaggaaatcaaaattaggagaattttgga |
22689362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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