View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13202_high_1 (Length: 577)
Name: NF13202_high_1
Description: NF13202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13202_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 561
Target Start/End: Complemental strand, 36315877 - 36315311
Alignment:
| Q |
2 |
acagatggtagaagctaaacttaaatgatttgaagatgtatagagaaaacatatgaattatgtagttagnnnnnnng--gagacgaggatagtcaaataa |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36315877 |
acagatggtagaaggtaaacttaaatgatttgaagatgtatagagaaaacatatgatttatgtagttagaaaaaaatatgagacgaggatggtcaaataa |
36315778 |
T |
|
| Q |
100 |
ttagagatagaggaatacctaaatatttatatccctnnnnnnnnn----ttatatgttagtgaattgatagaatattatagctttgttttctccnnnnnn |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36315777 |
ttagagatagaggaatacctaaatatttatatccctcaaaaaaaaaaaattatatgttagtgaattgatagaatattatagctttgtttttttttttttt |
36315678 |
T |
|
| Q |
196 |
nnn--------gtagccgttaatgatataaaactttggttgttgcggttttgaatccatctttctctaaatatttgaaacgacattctggactgattatt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315677 |
tttttttgtgtgtagccgttaatgatataaaactttggttgttgcggttatgaatccatctttctctaaatatttgaaacgacattctggactgattatt |
36315578 |
T |
|
| Q |
288 |
attttatacattcttttgttgtttgacaaattgaattatcatacgtacactacaaggaatctctcacattttgtactgagtttctttttctcccttttgc |
387 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315577 |
attttatatattcttttgttgtttgacaaattgaattatcatacgtacactacaaggaatctctcacattttgtactgagtttctttttctcccttttgc |
36315478 |
T |
|
| Q |
388 |
atcaaacctttcccatatgacaagactacacttctttgcagaaataatcacttctatcaactgtccactctccactctcccacgcactcttacgggttaa |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36315477 |
atcaaacctttcccatatgacaagactacacttctttgcagaaataatcacttctatca-------actctccactctcccacgcactcttacgggttaa |
36315385 |
T |
|
| Q |
488 |
gaaagcctgaatgaaaaacaagggtttcnnnnnnnnncttcgatgatgtttgatcatccacaatggaaggattt |
561 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36315384 |
gaaagcctgaatgaaaaacaagggtttctttttttttcttcgatgatgtttgatcattcacaatggaaggattt |
36315311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University