View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13202_high_2 (Length: 524)
Name: NF13202_high_2
Description: NF13202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13202_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 38877591 - 38877102
Alignment:
| Q |
18 |
actagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatatcaaagagttattaatatctggtaggactttggatatcaaagt |
117 |
Q |
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| T |
38877591 |
actagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatattaaagagttattaatatctggtaggactttggatatcaaagt |
38877492 |
T |
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| Q |
118 |
aatattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctctgatgcatatccaggagtggtacc |
217 |
Q |
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| T |
38877491 |
aatattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctctgatgcatatccaggagtggtacc |
38877392 |
T |
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| Q |
218 |
cgcaattggtttggtgtatgaccccacgggagagcttctctgaacagcctcacaaaaagcaaggagacgctcacggcttccaagttgtacggcctacagg |
317 |
Q |
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| T |
38877391 |
cgcaattggtttggtgtatgaccccacaggagagcttctctgaacagcctcacaaaaagcaaggagacgctcacggcttccaagttgtacggcctacagg |
38877292 |
T |
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| Q |
318 |
cattgaagatcaatttcacttatgatctgaataattatcatctatatacatactgaaagaaactcctaagggactagtttttgccaacatcaaccacagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38877291 |
cattgaagatcaatttcacttatgatctgaataattatcatctatatacatactgaaagaaactcctaagggactagtttttgccaacatcaaccacagt |
38877192 |
T |
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| Q |
418 |
ttttctaccagaaacggaatttcgctgccaacttaaaatcaaaattaaaaatcagatacaggtttcatctagaaagaaagatagcacagg |
507 |
Q |
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| T |
38877191 |
ttttctaccagaaacggaattttgctgccaacttaaaatcaaaattaaaaatcagatacaggtttcatctagaaagaaagatagcacagg |
38877102 |
T |
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