View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13202_low_3 (Length: 402)
Name: NF13202_low_3
Description: NF13202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13202_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24641761 - 24642119
Alignment:
| Q |
1 |
atgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24641761 |
atgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaag |
24641860 |
T |
|
| Q |
101 |
gataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24641861 |
gattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtga |
24641960 |
T |
|
| Q |
201 |
caacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagctaaagtcaccaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24641961 |
caacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagctaaagtcaccaaca |
24642060 |
T |
|
| Q |
301 |
aacccatcagaataaagtaagctttgtaattacgcgtaatcattttgttttgattgaac |
359 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
24642061 |
aacccatcagaaaaaagtaagctttgtaattacgcgtaatcattctgttttgattgaac |
24642119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24693130 - 24693488
Alignment:
| Q |
1 |
atgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
24693130 |
atgaaagtttatgaaccaacttgatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagag |
24693229 |
T |
|
| Q |
101 |
gataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
24693230 |
gataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgcgtga |
24693329 |
T |
|
| Q |
201 |
caacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagctaaagtcaccaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24693330 |
caacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagttgaagctaaattcaccaaca |
24693429 |
T |
|
| Q |
301 |
aacccatcagaataaagtaagctttgtaattacgcgtaatcattttgttttgattgaac |
359 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
24693430 |
aacccatcaaaataaaataagctttgtaattatgcgtaatcattctgttttgattgaac |
24693488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 24733509 - 24733205
Alignment:
| Q |
23 |
gatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctca |
122 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||| || |
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|
| T |
24733509 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcg |
24733410 |
T |
|
| Q |
123 |
catccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaaca |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
24733409 |
accccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaaca |
24733310 |
T |
|
| Q |
223 |
gcaacattgttggggatagtggttgaaacgggt------tggtgtttaaagcttcatacttagttgaagctaaagtcaccaacaaacccatcagaataaa |
316 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||| | || ||||||||||||||||| |||| |||||||| |||||||| ||||| |||||||| |
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|
| T |
24733309 |
gcaacaaagttggggatgatggttgaaatgggttagtactagtttttaaagcttcatacttcgttgcagctaaagccaccaacatgcccattagaataaa |
24733210 |
T |
|
| Q |
317 |
gtaag |
321 |
Q |
| |
|
|||| |
|
|
| T |
24733209 |
ataag |
24733205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 24648551 - 24648887
Alignment:
| Q |
24 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctcac |
123 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||| || |
|
|
| T |
24648551 |
atgcagttagagtgacagaataaagtaaccactaaaacgaatgagttgatgatacaccaattcgagaactgagagatgataatccacaaaagtgtgtcga |
24648650 |
T |
|
| Q |
124 |
atccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaacag |
223 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||| || |||||||| ||||||||| ||| |||||| |||| | ||||||||||||||||||| |
|
|
| T |
24648651 |
ccccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacag |
24648750 |
T |
|
| Q |
224 |
caacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatactt-agttgaagctaaagtcaccaacaaacccatcagaataaagtaagc |
322 |
Q |
| |
|
| ||||||| || | ||||||| || ||||| ||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
24648751 |
tagcattgttatgggtggtggttggaatgggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaac |
24648850 |
T |
|
| Q |
323 |
ttt---gtaattacgcgtaatcattttgttttgattg |
356 |
Q |
| |
|
||| ||| ||| ||||||||||||| ||||||||| |
|
|
| T |
24648851 |
tttatagtacttatgcgtaatcattttattttgattg |
24648887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 244 - 359
Target Start/End: Original strand, 24694459 - 24694574
Alignment:
| Q |
244 |
gttgaaacgggttggtgtttaaagcttcatacttagttgaagctaaagtcaccaacaaacccatcagaataaagtaagctttgtaattacgcgtaatcat |
343 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24694459 |
gttgaaacgggttagtgtttaaagcttcatacttagttgaagctaaagacaccaacaaacccatcagaataaaataagctttgtaattacgcgtaatcat |
24694558 |
T |
|
| Q |
344 |
tttgttttgattgaac |
359 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
24694559 |
tctgttttgattgaac |
24694574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 24720686 - 24720867
Alignment:
| Q |
14 |
aaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcg---agatctgagaaaggataatccac |
110 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||||| ||| ||| |||| |||| | |||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
24720686 |
aaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaattcctccagatctgagaaaggattatccac |
24720785 |
T |
|
| Q |
111 |
aaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaa |
192 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24720786 |
agaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 24656350 - 24656562
Alignment:
| Q |
54 |
actaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatat |
153 |
Q |
| |
|
||||||| |||| |||||| |||| |||||||| ||| | || || | |||||| | ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
24656350 |
actaaaaggaataagttgatgatataccaattccagaaatcagggagcagaatccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatga |
24656449 |
T |
|
| Q |
154 |
atatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgg |
253 |
Q |
| |
|
| ||||||| | |||||||| ||||| ||| || |||||| |||||| || || ||||||||||||||||| |||||||| | |||| || || |
|
|
| T |
24656450 |
acatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaaatctagcagtcaaaaacagcaacataagtggggataattgttggaaggg |
24656549 |
T |
|
| Q |
254 |
gttggtgtttaaa |
266 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24656550 |
gttggtgtttaaa |
24656562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 24634296 - 24634415
Alignment:
| Q |
104 |
aatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaa |
203 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||||||| || || ||||||| || |||||||| ||||| ||| || |||||| |||||| |
|
|
| T |
24634296 |
aatccaaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaa |
24634395 |
T |
|
| Q |
204 |
catagagatgtcaaaaacag |
223 |
Q |
| |
|
||| ||| || |||||||| |
|
|
| T |
24634396 |
aatacagaagtaaaaaacag |
24634415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 18157813 - 18157716
Alignment:
| Q |
24 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
121 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
|
|
| T |
18157813 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
18157716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 15282201 - 15282104
Alignment:
| Q |
24 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
121 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
|
|
| T |
15282201 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
15282104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 24223699 - 24223602
Alignment:
| Q |
24 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
121 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
|
|
| T |
24223699 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
24223602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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