View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_high_31 (Length: 243)

Name: NF13203_high_31
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_high_31
NF13203_high_31
[»] chr1 (6 HSPs)
chr1 (1-228)||(16416356-16416583)
chr1 (1-228)||(16427275-16427502)
chr1 (1-144)||(16438346-16438489)
chr1 (1-122)||(16417658-16417779)
chr1 (1-187)||(16442869-16443055)
chr1 (2-149)||(16499494-16499641)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 16416356 - 16416583
Alignment:
Q  1 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16416356 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 16416455  T
Q  101 ctttttcgtgcgtatggatctttttcaatgttagcgagatctatcacaggaacgattgttgtatcccctaactctgatgccttcttggtgctatcattgg 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||    
T  16416456 ctttttcgtgcgaatggatctttttcaatgttagcgagatctatcacaggaacgattgttgtatgccctaactctgatgccttcttggtgctatcacggg 16416555  T
Q  201 gttgatagaagatacgagggacctttgt 228  Q
    |||||||||| |||||||||| ||||||    
T  16416556 gttgatagaaaatacgagggatctttgt 16416583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 16427275 - 16427502
Alignment:
Q  1 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 100  Q
    ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||| || |||    
T  16427275 cccatctttcatttcattcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatatctctgatgcatctctaacactttcgacgacc 16427374  T
Q  101 ctttttcgtgcgtatggatctttttcaatgttagcgagatctatcacaggaacgattgttgtatcccctaactctgatgccttcttggtgctatcattgg 200  Q
    ||||| |||||  | |||||||    ||||||||| ||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||||   |    
T  16427375 cttttgcgtgcacacggatcttcaagaatgttagcaagatctatcacaggaatagttgttgtgtcccctgactctgatgccttcttggtgctatcaggtg 16427474  T
Q  201 gttgatagaagatacgagggacctttgt 228  Q
    |||||||||| |||||||||||||||||    
T  16427475 gttgatagaaaatacgagggacctttgt 16427502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 16438489 - 16438346
Alignment:
Q  1 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 100  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  16438489 cccatctttcatttcattcaaagtactcactgggatgccatgatttacaatctgaaaaaacccaaatgtctccgatgcatctctaacactttcaacaacc 16438390  T
Q  101 ctttttcgtgcgtatggatctttttcaatgttagcgagatctat 144  Q
    ||||| ||| |  |||||||||| ||||||||||| ||||||||    
T  16438389 cttttgcgtacacatggatctttatcaatgttagcaagatctat 16438346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 16417658 - 16417779
Alignment:
Q  1 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 100  Q
    ||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16417658 cccatctttaattttctccaaagtactcagtgggatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaacactttcaacaacc 16417757  T
Q  101 ctttttcgtgcgtatggatctt 122  Q
    ||||| |||||  |||||||||    
T  16417758 cttttccgtgcacatggatctt 16417779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 16442869 - 16443055
Alignment:
Q  1 cccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaacc 100  Q
    ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| || || |||    
T  16442869 cccatctttcatttcattcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatgtctctgatgcatctctaacactctcgacgacc 16442968  T
Q  101 ctttttcgtgcgtatggatctttttcaatgttagcgagatctatcacaggaacgattgttgtatcccctaactctgatgccttcttg 187  Q
    ||||| | |||  | |||||||    ||||||||| ||||||||||||||||   ||||||| |||||| |||||||||||||||||    
T  16442969 cttttgcatgcacacggatcttcaagaatgttagcaagatctatcacaggaatagttgttgtgtcccctgactctgatgccttcttg 16443055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 16499641 - 16499494
Alignment:
Q  2 ccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaaccc 101  Q
    |||||||||||||||| |||| |||||||| | |||| |||||| |||||||||||||| || | ||| |||||||||||||||| ||||||||||||||    
T  16499641 ccatctttcatttccttcaaaatactcacttggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaaccc 16499542  T
Q  102 tttttcgtgcgtatggatctttttcaatgttagcgagatctatcacag 149  Q
    |||| | |||  |||||||||  ||||||||||| |||||||||||||    
T  16499541 ttttgcatgcacatggatcttcatcaatgttagcaagatctatcacag 16499494  T

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