View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_high_6 (Length: 508)

Name: NF13203_high_6
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_high_6
NF13203_high_6
[»] chr3 (9 HSPs)
chr3 (126-286)||(5565257-5565417)
chr3 (295-428)||(5565170-5565302)
chr3 (212-328)||(31896518-31896633)
chr3 (330-410)||(14175288-14175364)
chr3 (212-328)||(31945875-31945990)
chr3 (194-239)||(13539573-13539618)
chr3 (212-328)||(31912227-31912342)
chr3 (366-403)||(13539487-13539524)
chr3 (212-328)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (369-466)||(43618600-43618697)
[»] chr2 (1 HSPs)
chr2 (25-93)||(274714-274782)
[»] chr7 (1 HSPs)
chr7 (366-418)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (365-426)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (317-395)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (212-311)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (212-311)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 5565417 - 5565257
Alignment:
Q  126 aaacaaagatcataatcaacgaatgattcagtattagaaatgaggaatacgaaaactgaaaataacaattaaccttgcaaaataaaagaagcttctgaca 225  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5565417 aaacaaagatcaacatcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgaca 5565318  T
Q  226 gcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactc 286  Q
    | |||  |||| || ||| ||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565317 gtgacatcgacacggtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  295 tgaagagcaaattccgatgcgatggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgat 394  Q
    |||||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  395 gatgcttttactttagtgggagaaggctaaaaaa 428  Q
    |||||||||||||||||||||||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | |||||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  312 tgcgatggtcaacgatg 328  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  330 tggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatgatgcttttactttag 410  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatggg-ttttgtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  312 tgcgatggtcaacgatg 328  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 13539618 - 13539573
Alignment:
Q  194 ttaaccttgcaaaataaaagaagcttctgacagcgaccccgacgcg 239  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcg 13539573  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||| |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  312 tgcgatggtcaacgatg 328  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 13539524 - 13539487
Alignment:
Q  366 tttgtagaggatgaagagatgaagacgatgatgctttt 403  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13539524 tttgcagaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | | |||| ||| |||||||| |  |||||||||| ||||| |||||| |||||| |  ||| | ||||||| |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  312 tgcgatggtcaacgatg 328  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 43618600 - 43618697
Alignment:
Q  369 gtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaattaacgaaatgagggaataagaagaagagtttttgtgt 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||    
T  43618600 gtagaagatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 274782 - 274714
Alignment:
Q  25 aaatgaatgattagaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 93  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  274782 aaatgaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 7854298 - 7854246
Alignment:
Q  366 tttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 418  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854298 tttgcagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 31952902 - 31952963
Alignment:
Q  365 ttttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaa 426  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||||| |||| ||||    
T  31952902 ttttgtagaggatgaagagatgaagatgatgatggctttattttagtgggaggaggccaaaa 31952963  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  317 tggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatg 395  Q
    ||||||||||  |||||  ||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  212 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 311  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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