View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13203_high_8 (Length: 491)
Name: NF13203_high_8
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 37138511 - 37138049
Alignment:
| Q |
1 |
aaaaacattataagatgctaaacaagtagaaatcagcaaacttgatttaatatgtttcgaaacataagaacacatgaaactaaaaataaagcacacttgt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37138511 |
aaaaacattatacgatgctaaacaagtagaaataagcaaacttgatttaatatgtttcgaaacataagaacacatgagactaaaaataaagcacacttgt |
37138412 |
T |
|
| Q |
101 |
atccaaaaatccaaactttcacaccaatctctaacatattctaaataacataaattgactacggataaaaatttaatgtcattatattatccaacccata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37138411 |
atccaaaaatccaaactttcacaccaatctctaacatattctaaataacataaattgactacggataaaaatttaatgtcattatattatccaacccata |
37138312 |
T |
|
| Q |
201 |
tgagcattactaatctctaccattaaatattctaactattacatcatatggttctaccatctacttcactaggaatattcgttttgtaatcattacaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37138311 |
tgagcattactaatctctaccattaaatattctaactattacatcatatggttctaccatctacttcactacgaatattcgttttgtaatcattacaaaa |
37138212 |
T |
|
| Q |
301 |
caaaacnnnnnnnnngtctttgagctcaaattaacatatgccaggcatgttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccg |
400 |
Q |
| |
|
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37138211 |
cacaa------------ctttgagctcaaattaacatatgcctggcatgttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccg |
37138124 |
T |
|
| Q |
401 |
ccttcatcagttggtgtttcagtttccaatgactgactttttcctctacaataccattcaggcattggtatttct |
475 |
Q |
| |
|
| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37138123 |
ctttcatcagttggaatttcagttcccaatgactgactttttcctctacaataccattcaggcattggtatttct |
37138049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University