View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_high_9 (Length: 469)
Name: NF13203_high_9
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 44 - 450
Target Start/End: Complemental strand, 48320301 - 48319895
Alignment:
| Q |
44 |
taataatgatccatttgcttacaatttagaatcaccagaaaatgatcatcatagtcaacaagtgcatggtggttgtgatgatccttatatgtacaattta |
143 |
Q |
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| T |
48320301 |
taataatgatccatttgcttacaatttagaatcaccagaaaatgatcatcatattcaacaagtgcatggtggttgtaatgatccttatatgtacaattta |
48320202 |
T |
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| Q |
144 |
gtaacaccagaaaatcaccatgaatatattcaacaagggcagggtggtaatactgattcattttcggatgttatgttacaacaacatggaaatggtagta |
243 |
Q |
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| T |
48320201 |
gtaccaccagaaaatcaccatgaatatattcaacaagggcagggtggtaatactgattcattttcggatgttatgttacaacaacatggaaatggtagta |
48320102 |
T |
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| Q |
244 |
caaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtaataatttttcatttggaagaaatagccttgaagtgggtgatagttc |
343 |
Q |
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| T |
48320101 |
caaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtattaatttttcatttggaagaaatagccttgaagtgggtgatagttc |
48320002 |
T |
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| Q |
344 |
atcaagaatgtatgagaatcaacaacagagtatacctgaaattcagattccggttttgttgaaccaaaccgaactgcgagcacttaatcaatggccaccc |
443 |
Q |
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| T |
48320001 |
atcaagaatatatgagaatcaacaacaaagtatacctgaaattcagattcccattttgttgaaccaaaccgaactgcgagcacttaatcaatggccaccc |
48319902 |
T |
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| Q |
444 |
acagtaa |
450 |
Q |
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| T |
48319901 |
acagtaa |
48319895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 372
Target Start/End: Original strand, 26325883 - 26326027
Alignment:
| Q |
225 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtaataatttttcatttggaagaaatagcc |
324 |
Q |
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| T |
26325883 |
caacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatttggaatgaataact |
26325982 |
T |
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| Q |
325 |
ttgaagtgggtgatagttcatcaagaatgtatgagaatcaacaacaga |
372 |
Q |
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| T |
26325983 |
ttgaagcggg---tagttcatcacgaacgaatgagaatcaacaacaga |
26326027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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