View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_1 (Length: 788)
Name: NF13203_low_1
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 745; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 8 - 772
Target Start/End: Original strand, 49544963 - 49545727
Alignment:
| Q |
8 |
acatcatcaaatggaaggtaacataaacataggtagccttatttttaaatccgtcgtatgcctcaatatgtattggtccggccttgacatatgttgtatg |
107 |
Q |
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| T |
49544963 |
acatcatcaaatggaaggtaacataaacataggtagccttatttttaaatccgtcgtatgcctcaatatgtattggtccagccttgacatatgttgtatg |
49545062 |
T |
|
| Q |
108 |
tttcgtaattttctttatgcaggagttgcaagacagagttgacagggtcatggattattcagatgtggagttgatgtcattatggagggaaatagttgac |
207 |
Q |
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| T |
49545063 |
tttcgtaattttctttatgcaggagttgcaagacagagttgacagggtcatggattattcagatttggagttgatgtcattatggagggaaatagttgac |
49545162 |
T |
|
| Q |
208 |
ttccatggggagatggttttgttggagaactatagtgcacttaactacacaggcatgatctaaattctaatctaagatctgatatagtcatatattcatg |
307 |
Q |
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| T |
49545163 |
ttccatggggagatggttttgttggagaactatagtgcacttaactacacaggcatgatctaaattctaatctaagatctgatatagttatatattcatg |
49545262 |
T |
|
| Q |
308 |
aataatgtaaatgttgacttgtatgtgtttttaattcatttgaaaagagaaatttattagattatatatcatgaatgtttatgcaggtttagtgaagata |
407 |
Q |
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| T |
49545263 |
aataatgtaactgttgacttgtgtgtgtttttaattcatttgaaaagagaaatttattagattatatatcatgaatgtttatgcaggtttagtgaagata |
49545362 |
T |
|
| Q |
408 |
ataaagaaacacgataagcgaactggtggactacttcgcttgccgtttatccaagaggttctgaaccagccctttttcgaaactgatgtgcttaacaacc |
507 |
Q |
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| T |
49545363 |
ataaagaaacacgataagcgaactggtggactacttcgcttgccgtttatccaagaggttctgaaccagccctttttcgaaactgatgtgcttaacaacc |
49545462 |
T |
|
| Q |
508 |
ttgttaaggagtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataa |
607 |
Q |
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| T |
49545463 |
ttgttaaggagtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataa |
49545562 |
T |
|
| Q |
608 |
agagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaactttatcagcattgcgtaccttggaagaa |
707 |
Q |
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| T |
49545563 |
agagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaactttatcagcattgcgtaccttggaagaa |
49545662 |
T |
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| Q |
708 |
attcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatac |
772 |
Q |
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| T |
49545663 |
attcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatac |
49545727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 389 - 527
Target Start/End: Complemental strand, 2469166 - 2469028
Alignment:
| Q |
389 |
tgcaggtttagtgaagataataaagaaacacgataagcgaactggtggactacttcgcttgccgtttatccaagaggttctgaaccagccctttttcgaa |
488 |
Q |
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||||||||| || ||||||||||||||| | |||||||||||||||| ||||||||| || || ||||||||||| || |||||||||| || ||| || |
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| T |
2469166 |
tgcaggtttggttaagataataaagaaatatgataagcgaactggtgcactacttcggttaccttttatccaagatgtcttgaaccagccattcttcaaa |
2469067 |
T |
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| Q |
489 |
actgatgtgcttaacaaccttgttaaggagtgtgaggtg |
527 |
Q |
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| T |
2469066 |
atcgatgtgcttaacaagcttgtgaaggagtgtgaggtg |
2469028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 2469923 - 2469838
Alignment:
| Q |
175 |
gagttgatgtcattatggagggaaatagttgacttccatggggagatggttttgttggagaactatagtgcacttaactacacagg |
260 |
Q |
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| T |
2469923 |
gagttgatgacagtagggagggaaatagtggattttcatggagagatggttttgttagagaactatagtgcacttaactacacagg |
2469838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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