View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_low_11 (Length: 431)

Name: NF13203_low_11
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_low_11
NF13203_low_11
[»] chr3 (3 HSPs)
chr3 (19-205)||(36437670-36437856)
chr3 (237-310)||(36437898-36437971)
chr3 (384-422)||(36438039-36438077)
[»] chr4 (3 HSPs)
chr4 (22-205)||(16313102-16313285)
chr4 (237-310)||(16313327-16313400)
chr4 (384-422)||(16313468-16313506)
[»] chr6 (3 HSPs)
chr6 (22-205)||(5859361-5859544)
chr6 (237-310)||(5859586-5859659)
chr6 (384-422)||(5859727-5859765)
[»] scaffold0197 (3 HSPs)
scaffold0197 (19-205)||(29230-29422)
scaffold0197 (237-310)||(29467-29540)
scaffold0197 (384-422)||(29608-29646)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 36437670 - 36437856
Alignment:
Q  19 aaccccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcagca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36437670 aaccccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcggca 36437769  T
Q  119 atggttgttcgccgaagaaccaatccaaacgcgaattttgttcgacaattgtttgacggcggcggcggcgaactttttgagagaaat 205  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  36437770 atggttgttcgccggagaaccaacccaaacgcgaattttgttcgacaattgttttacggcggcggctgcgaactttttgagggaaat 36437856  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 36437898 - 36437971
Alignment:
Q  237 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36437898 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 36437971  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 36438039 - 36438077
Alignment:
Q  384 cttgaaagagaagatgagatagagggaagaagatgatga 422  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36438039 cttgaaagagaagatgagatagagggaagaagatgatga 36438077  T

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Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 16313102 - 16313285
Alignment:
Q  22 cccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcagcaatg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16313102 cccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcggcaatg 16313201  T
Q  122 gttgttcgccgaagaaccaatccaaacgcgaattttgttcgacaattgtttgacggcggcggcggcgaactttttgagagaaat 205  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  16313202 gttgttcgccggagaaccaacccaaacgcgaattttgttcgacaattgttttacggcggcggctgcgaactttttgagggaaat 16313285  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 16313327 - 16313400
Alignment:
Q  237 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16313327 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 16313400  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 16313468 - 16313506
Alignment:
Q  384 cttgaaagagaagatgagatagagggaagaagatgatga 422  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16313468 cttgaaagagaagatgagatagagggaagaagatgatga 16313506  T

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Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 5859361 - 5859544
Alignment:
Q  22 cccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcagcaatg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5859361 cccttttcaagatctatgttttccccaaatcatcaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtggcggcaatg 5859460  T
Q  122 gttgttcgccgaagaaccaatccaaacgcgaattttgttcgacaattgtttgacggcggcggcggcgaactttttgagagaaat 205  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  5859461 gttgttcgccggagaaccaacccaaacgcgaattttgttcgacaattgttttacggcggcggctgctaactttttgagggaaat 5859544  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 5859586 - 5859659
Alignment:
Q  237 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 310  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859586 ctgtgaattgagaggaaatgagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 5859659  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 5859727 - 5859765
Alignment:
Q  384 cttgaaagagaagatgagatagagggaagaagatgatga 422  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5859727 cttgaaagagaagatgagatagagggaagaagatgatga 5859765  T

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Target: scaffold0197 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 29230 - 29422
Alignment:
Q  19 aaccccttttcaagatctatgttttccccaaatcatcaaca------taaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtg 112  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29230 aaccccttttcaagatctatgttttccccaaatcatcaacataaacataaaaaccgttattctctctgttcttgttgtgttggtgttgttgaagacggtg 29329  T
Q  113 gcagcaatggttgttcgccgaagaaccaatccaaacgcgaattttgttcgacaattgtttgacggcggcggcggcgaactttttgagagaaat 205  Q
    || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29330 gcggcaatggttgttcgccggagaaccaacccaaacgcgaattttgttcgacaattgtttgacggcggcggcggcgaactttttgagggaaat 29422  T

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Target: scaffold0197; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 29467 - 29540
Alignment:
Q  237 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagaggaaaagtgagggaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29467 ctgtgaattgagaggaaaggagcatttgtattgctgggtttgtgtttctggatttgagagaaaaagtgagggaa 29540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 29608 - 29646
Alignment:
Q  384 cttgaaagagaagatgagatagagggaagaagatgatga 422  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  29608 cttgaaagagaagatgagatagagggaagaatatgatga 29646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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