View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_12 (Length: 421)
Name: NF13203_low_12
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 16416340 - 16416090
Alignment:
| Q |
10 |
gagcaatatagtgaggtcaaaaaggatgtttatacccgtgaacataaaccttttatgcattatagtaatattgctctatattccgcaccagctgctactt |
109 |
Q |
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| T |
16416340 |
gagcaagatagtgaggtcaagaaggaattttatacacgtgaacataaaccttttatgcattatagtaatattgctctatataccgcaccagctgctactt |
16416241 |
T |
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| Q |
110 |
ggaaagattctttcctttgcaacatggctcctattgcccctaaaccagaagacctgccagctgtatgcaggtaatttttagctaattaatgttactttgt |
209 |
Q |
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| T |
16416240 |
ggaaagattctttcctttgcaacatggctcctattccccctaaaccagaagacctgccagttgtatgcaggtaatttttagctaattaatgttactttgt |
16416141 |
T |
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| Q |
210 |
atttcatctgatgaatccttaatttagcaatgagcttggtgattatttgga |
260 |
Q |
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| T |
16416140 |
ctttcatgcaatgaatccttaatttagcaatgagctagttgattatttgga |
16416090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 16499658 - 16499843
Alignment:
| Q |
10 |
gagcaatatagtgaggtcaaaaaggatgtttatacccgtgaacataaaccttttatgcattatagtaatattgctctatattccgcaccagctgctact- |
108 |
Q |
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| T |
16499658 |
gagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaaaccttttatgtataatagtaattttgctctatatacctcacaagcttcaacta |
16499757 |
T |
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| Q |
109 |
--tggaaagattctttcctttgcaacatggctcctattgcccctaaaccagaagacctgccagctgtatgcaggtaatttttagct |
192 |
Q |
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| T |
16499758 |
attggaaagattctttcctctacaacatgtctcctaatccccctaaaccagaagatctcccagttgtatgcaggtaatttttagct |
16499843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 16427161 - 16427079
Alignment:
| Q |
105 |
tacttggaaagattctttcctttgcaacatggctcctattgcccctaaaccagaagacctgccagctgtatgcaggtaatttt |
187 |
Q |
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| T |
16427161 |
tacttggaaagataccttcctttgtaacagggctcctaatccccccaaaccagaagaccttccagctgtatgcaggtactttt |
16427079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 16442755 - 16442673
Alignment:
| Q |
105 |
tacttggaaagattctttcctttgcaacatggctcctattgcccctaaaccagaagacctgccagctgtatgcaggtaatttt |
187 |
Q |
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| T |
16442755 |
tacttggaaagataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtactttt |
16442673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 16438603 - 16438690
Alignment:
| Q |
108 |
ttggaaagattctttcctttgcaacatggctcctattgcccctaaaccagaagacctgccagctgtatgcaggtaatttttagctaat |
195 |
Q |
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| T |
16438603 |
ttggaaagatactttcttatgcaacatggctcctaatccacctaaaccagaagacctgccagccgtaatcaggtactttgcagctaat |
16438690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 34622640 - 34622697
Alignment:
| Q |
260 |
atgagctttgataactgaacacaaaagttcagccacaaaacagacgccgtatcctgta |
317 |
Q |
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| T |
34622640 |
atgagctttgataactgaacacaaaagttcagccacaaaatagacatcgtatcctgta |
34622697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 29898084 - 29898042
Alignment:
| Q |
262 |
gagctttgataactgaacacaaaagttcagccacaaaacagac |
304 |
Q |
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| T |
29898084 |
gagctttgataactgaacacaaaagttcagccacaaaatagac |
29898042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 41553073 - 41553130
Alignment:
| Q |
260 |
atgagctttgataactgaacacaaaagttcagccacaaaacagacgccgtatcctgta |
317 |
Q |
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| T |
41553073 |
atgagctttgataactgaacacaaaaattcagccacaaaatagacatcgtatcctgta |
41553130 |
T |
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