View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_13 (Length: 395)
Name: NF13203_low_13
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 27 - 370
Target Start/End: Complemental strand, 34062410 - 34062061
Alignment:
| Q |
27 |
tatatattcacccacagaatatgccttgctacactatgtggctttaaaattggttccaaatgttccacaacattagtgatattttcaaagtacgtacatg |
126 |
Q |
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| T |
34062410 |
tatattttcacacacagaatatgccttgctacactatgtggctttaaaattggttccaaatgttccacaacattagtgatattttcaaagtacgtacatg |
34062311 |
T |
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| Q |
127 |
ctagagtgctttgagtgattgtttgataaaataatttgtagcgaatatgattttataaaattagtttagttaaaattgggaatttgaagtcaattatgtt |
226 |
Q |
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| T |
34062310 |
ctagagtgctttgagtgattgtttgataaaataatttgtagcgaatatgattttataaaattagtttagttaaaattgggaatttgaagtcaattatgtt |
34062211 |
T |
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| Q |
227 |
tga-nnnnnnnncattccaaatatatagttatcgtaaaatttgatgcgaattcaactcataacataacttac-----ttttcttcggtgttttgttgata |
320 |
Q |
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| T |
34062210 |
tgatttttttttcattccaaatatatagttatcgtaaaatctgatgcgaattcaactcataacataagttactttaattttcttcggtgttttgttgaca |
34062111 |
T |
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| Q |
321 |
taaatatatttttgatgcctctattttcatttttcatgaagttttggtat |
370 |
Q |
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| T |
34062110 |
taaacatatttttgatacctctattttcatttttcatgaagttttggtat |
34062061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 20960179 - 20960223
Alignment:
| Q |
342 |
tattttcatttttcatgaagttttggtatccttattttaaaattc |
386 |
Q |
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| T |
20960179 |
tattttcattttttctaaagttttggtatccttgttttaaaattc |
20960223 |
T |
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