View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_low_20 (Length: 303)

Name: NF13203_low_20
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_low_20
NF13203_low_20
[»] chr5 (18 HSPs)
chr5 (4-285)||(9003639-9003920)
chr5 (99-285)||(8529208-8529394)
chr5 (100-285)||(1599949-1600134)
chr5 (152-285)||(8535825-8535958)
chr5 (99-289)||(2874142-2874335)
chr5 (99-285)||(9074375-9074561)
chr5 (99-289)||(2856532-2856725)
chr5 (99-285)||(8641651-8641837)
chr5 (99-289)||(2844705-2844898)
chr5 (104-285)||(8644485-8644675)
chr5 (101-289)||(2904648-2904839)
chr5 (104-283)||(8637140-8637328)
chr5 (176-289)||(8547755-8547864)
chr5 (104-275)||(8678087-8678267)
chr5 (13-50)||(1600181-1600218)
chr5 (13-50)||(9074604-9074641)
chr5 (15-50)||(8535691-8535726)
chr5 (18-50)||(8644405-8644437)
[»] chr7 (4 HSPs)
chr7 (99-285)||(48361501-48361687)
chr7 (174-290)||(35780159-35780275)
chr7 (12-50)||(48361733-48361771)
chr7 (13-50)||(35780016-35780053)
[»] chr4 (1 HSPs)
chr4 (99-285)||(9443369-9443555)
[»] chr1 (1 HSPs)
chr1 (89-289)||(5131028-5131228)
[»] scaffold0627 (2 HSPs)
scaffold0627 (174-289)||(5012-5127)
scaffold0627 (11-50)||(4833-4872)
[»] chr6 (1 HSPs)
chr6 (174-289)||(16716713-16716828)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 9003639 - 9003920
Alignment:
Q  4 gagaggatgagtcacaaatgtaaagaaatccccttaattctcccatgttgattctcctgtctgtaattccgtctacgattctaccattttgaaaaacatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003639 gagaggatgagtcacaaatgtaaagaaatccccttaattctcccatgttgattctcctgtctgtaattccgtctacgattctaccattttgaaaaacatg 9003738  T
Q  104 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9003739 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcgccattc 9003838  T
Q  204 acacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003839 acacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 9003920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 8529208 - 8529394
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 198  Q
    ||||||||||| |||||||| || || |||||||||||||| ||   ||||  |||||||||| ||||| ||   |||||||| ||||||||||||||||    
T  8529208 acatgtggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac 8529307  T
Q  199 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| |||||||    
T  8529308 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgt 8529394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 285
Target Start/End: Complemental strand, 1600134 - 1599949
Alignment:
Q  100 catgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcacc 199  Q
    |||||||||| |||||||| || || ||||||||| |||| |||  ||||  ||||||||||||||||  |   ||| |||| |||||||||||||||||    
T  1600134 catgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcacc 1600035  T
Q  200 attcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    |||||||||||| ||||  |||||  |||||| ||| | ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  1600034 attcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgt 1599949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 8535825 - 8535958
Alignment:
Q  152 caatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccact 251  Q
    |||||||||| ||||||||  ||||||||| | |||||| |||||||||||||||||||| ||||| || |||||| ||| ||| | |||||||||||||    
T  8535825 caatattgacctttgcagaccatcaaatcttagccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccact 8535924  T
Q  252 tcaacatttctccatgatggtgttcccagtgtgt 285  Q
    |||||||||||||| ||||| ||||| |||||||    
T  8535925 tcaacatttctccaggatggggttccaagtgtgt 8535958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 2874335 - 2874142
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaa---tcaaatctgatccaatgaagtg 195  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| ||||  |  ||   |||||| | |||||||||||||    
T  2874335 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtg 2874236  T
Q  196 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtat 289  Q
    | ||||||||||| || ||||    |||  || ||| ||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  2874235 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtat 2874142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 9074561 - 9074375
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 198  Q
    ||||| ||||| |||||||| || || ||||||||| |||| |||  |||| ||||||||||| ||||| ||   ||| |||| ||||||||||||||||    
T  9074561 acatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcac 9074462  T
Q  199 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||||||||||||| ||||| |  |||||| ||| ||| | ||||||||||||||||||||||||| ||  || |||||| |||||||    
T  9074461 cattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagtgtgt 9074375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 2856725 - 2856532
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaa---tcaaatctgatccaatgaagtg 195  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| ||||  |  ||   |||||| | |||||||||||||    
T  2856725 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtg 2856626  T
Q  196 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtat 289  Q
    | ||||||||||| || ||||    |||  || ||| ||| | |||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  2856625 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtat 2856532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 8641651 - 8641837
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 198  Q
    ||||||||||| ||||||||  | |  || |||||| ||||||||  |||||| ||||||||| |||||      |||||| |||| ||||||||  |||    
T  8641651 acatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttgattcaatgaagaacac 8641750  T
Q  199 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
     |||||||||||| ||||| ||||||||| ||||||| |  |||||||||||||||||||||||||||||||||| ||| |||||||    
T  8641751 tattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgt 8641837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 2844898 - 2844705
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacat---ttgcagaaaatcaaatctgatccaatgaagtg 195  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| |   ||||      |||||| | |||||||||||||    
T  2844898 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccccgtttcaaatataatccaatgaagtg 2844799  T
Q  196 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtat 289  Q
    | ||||||||||| || ||||    |||  || ||| ||| | |||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  2844798 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttccaagcgtgtgtat 2844705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 285
Target Start/End: Original strand, 8644485 - 8644675
Alignment:
Q  104 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 203  Q
    |||||| |||||||| ||||| ||||||||| |||| |||  |||||||||||| ||| |||    |   |||||||||||||||||||| ||||||||     
T  8644485 tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 8644584  T
Q  204 acacaagtcggataattaagactccaa---------atagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||| |||| ||||||| ||||||| ||         ||||| | ||||||||| |||||| |||||||||||||||||||||| |||||||    
T  8644585 acataagtgggataatgaagactcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgt 8644675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 289
Target Start/End: Complemental strand, 2904839 - 2904648
Alignment:
Q  101 atgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatc---aaatctgatccaatgaagtgca 197  Q
    ||||||||| |||||||| ||||| | ||||||| |||| ||| ||||||||||||||||| ||||  ||  |||   || | |||||||||| | | |     
T  2904839 atgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttgttgaccatcttcaactatgatccaatgtaatccg 2904740  T
Q  198 ccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtat 289  Q
    ||||||||||| || ||||    |||  || ||| ||| | ||||||||||||||||| |||||||||||||| |||||| || ||||||||    
T  2904739 ccattcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtat 2904648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 283
Target Start/End: Original strand, 8637140 - 8637328
Alignment:
Q  104 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 203  Q
    |||||| |||||||| ||||| |||||||||||||| |||  |||||||||||| ||| |||   ||   | |||||||||||||||||  | |||||||    
T  8637140 tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattc 8637239  T
Q  204 acacaagtcggataattaagac----------tccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgt 283  Q
    |||||||| ||||||  ||| |          ||||| |||| | ||| |||||||||||| |||||||||||||||||||||| |||||    
T  8637240 acacaagtgggataacgaagccatatatttgatccaa-tagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgt 8637328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 8547864 - 8547755
Alignment:
Q  176 aaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgtt 275  Q
    ||||| ||||||||||||||||| |||||||||||| |||||  |||||    ||  ||| | ||||||||||||||    ||||||||||| |||||||    
T  8547864 aaatcggatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgtt 8547769  T
Q  276 cccagtgtgtgtat 289  Q
    || |||||||||||    
T  8547768 ccgagtgtgtgtat 8547755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 8678087 - 8678267
Alignment:
Q  104 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 203  Q
    |||||| |||||||| ||||| ||| ||||| |||| |||  |||||||||||| |||||||   ||   ||||||| |||||||||||| ||||||||     
T  8678087 tggaggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccatta 8678186  T
Q  204 acacaagtcggataattaagactccaa---------atagacagttgaggatccacttcaacatttctccatgatggtgtt 275  Q
    | |||||| ||||||   || ||| ||         ||||| | |||||||||||||||| ||||||||||||||||||||    
T  8678187 atacaagtgggataacggagcctcaaatctgatccaatagaaatttgaggatccacttcagcatttctccatgatggtgtt 8678267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 1600218 - 1600181
Alignment:
Q  13 agtcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1600218 agtcacaaatgtaaagaaatccctttaattctcccatg 1600181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 9074641 - 9074604
Alignment:
Q  13 agtcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9074641 agtcacaaatgtaaagaaatccctttaattctcccatg 9074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 8535691 - 8535726
Alignment:
Q  15 tcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8535691 tcacaaatgtaaagaaatccctttaattctcccatg 8535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8644405 - 8644437
Alignment:
Q  18 caaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||| |||||||||||||||||||||    
T  8644405 caaatgtaaagtaatccccttaattctcccatg 8644437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 48361687 - 48361501
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 198  Q
    ||||||||||| |||||||| || || | ||||||| |||| |||  |||| ||||||||||| ||||| ||   |||||||| ||||||||||||||||    
T  48361687 acatgtggaggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac 48361588  T
Q  199 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||||||||||||| ||||| |  |||||| ||| ||| |  |||||||||||||||||||| ||||| ||||||||||| |||||||    
T  48361587 cattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgt 48361501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 35780159 - 35780275
Alignment:
Q  174 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 273  Q
    |||||| ||||||| |||||  |||||||||||||||| ||||| ||||| ||  ||||||| |   ||||||||||||||||| |||||||||||||||    
T  35780159 tcaaatttgatccagtgaagcacaccattcacacaagtgggatacttaaggcttgaaatagaaatacgaggatccacttcaacagttctccatgatggtg 35780258  T
Q  274 ttcccagtgtgtgtatt 290  Q
     ||| ||||||| ||||    
T  35780259 ctccaagtgtgtttatt 35780275  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 48361771 - 48361733
Alignment:
Q  12 gagtcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48361771 gagtcacaaatgtaaagaaatccctttaattctcccatg 48361733  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 35780016 - 35780053
Alignment:
Q  13 agtcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  35780016 agtcacaaatgtaaagaaatccctttaattctcccatg 35780053  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 9443369 - 9443555
Alignment:
Q  99 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 198  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||   ||||  |||||||||| |||||  |   |||||||| ||||||||||||||||    
T  9443369 acatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcac 9443468  T
Q  199 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgt 285  Q
    ||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| |||||||    
T  9443469 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgt 9443555  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 289
Target Start/End: Original strand, 5131028 - 5131228
Alignment:
Q  89 attttgaaaaacatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaa 188  Q
    ||||| ||| || |||||||| ||||| || ||||| || |||||| |||| ||| |||||||||| | |||| |||    || |||| || ||||||||    
T  5131028 attttcaaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaa 5131127  T
Q  189 tgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgta 288  Q
    |||||||   ||||||||||||| ||| | | ||| ||| ||||||| |  ||| |||||||||||||||||||||||||   |||||| || |||||||    
T  5131128 tgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgta 5131227  T
Q  289 t 289  Q
    |    
T  5131228 t 5131228  T

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Target: scaffold0627 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 5012 - 5127
Alignment:
Q  174 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 273  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||   |||  || | |||||||||||| |  | ||||||||||| || ||    
T  5012 tcaaatctgatccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatg 5111  T
Q  274 ttcccagtgtgtgtat 289  Q
    |||| |||||||||||    
T  5112 ttccgagtgtgtgtat 5127  T

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Target: scaffold0627; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 4833 - 4872
Alignment:
Q  11 tgagtcacaaatgtaaagaaatccccttaattctcccatg 50  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4833 tgagtcacaaatgtaaagaaatccctttaattctcccatg 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 16716713 - 16716828
Alignment:
Q  174 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 273  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||   ||||||   |||  || | |||||||||||| |  | ||||||||||| |||||    
T  16716713 tcaaatgtgaaccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtg 16716812  T
Q  274 ttcccagtgtgtgtat 289  Q
    |||| |||||||||||    
T  16716813 ttccgagtgtgtgtat 16716828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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