View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13203_low_23 (Length: 282)
Name: NF13203_low_23
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 42898155 - 42898414
Alignment:
| Q |
7 |
ggagcagagatttttcatacttaagtcttgtggctgaatacagatgagttccctgaaaaactagtggaaataaatagtcttaattccaaagaaggataat |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42898155 |
ggagcagagatttttcatactggagtcttgtggctgaatacagatgagttctccaaaaaactagtggaaataaatagtcttaattccaaagaaggataat |
42898254 |
T |
|
| Q |
107 |
cgagaaactaggagggatttacgccttatttcactatgcaacatcctttacaaaatcatatcaaggtgttagctaatagactcgagaggttattaccaaa |
206 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42898255 |
cgagaaactatgagggatttacgccctatttcactatgcaacatcctttacaaaatcatatcaaggtgttagctgatagactcgagaggttattaccaaa |
42898354 |
T |
|
| Q |
207 |
atgcatttcacaagaacaatcaacttttgtggaaaatagatctattcttgataatgtttg |
266 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42898355 |
atgcatttcacaagaacaatcagcttttgtggaaaatagatctattcttgataatttttg |
42898414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 15163557 - 15163299
Alignment:
| Q |
10 |
gcagagatttttcatacttaagtcttgtggctgaatacagatgagttccctgaaaaactagtggaaataaata--gtcttaattccaaagaaggataatc |
107 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
15163557 |
gcagagatttttcatactagagttttgtggctgaatacaggcgagttcccggaaaaactagtggaaacaaatatcgtcttaattccaaagaaggataatc |
15163458 |
T |
|
| Q |
108 |
gagaaactaggagggatttacgccttatttcactatgcaacatcctttacaaaatcatatcaag-gtgttagctaatagactcgagaggttattaccaaa |
206 |
Q |
| |
|
|||||| | | ||||||||| || ||||||||| | || ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
15163457 |
cagaaacaacgtgggatttacaccctatttcacttggaaaattcctttacaaaatcatatcaaaagtgttaggtaatagactcgagagattattgccaaa |
15163358 |
T |
|
| Q |
207 |
atgcatttcacaagaacaatcaacttttgtggaaaatagatctattcttgataatgttt |
265 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
15163357 |
atgcatttcacaagaacacttaacttttgtggaaaatatatctattttggataatgttt |
15163299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 22409275 - 22409211
Alignment:
| Q |
200 |
taccaaaatgcatttcacaagaacaatcaacttttgtggaaaatagatctattcttgataatgtt |
264 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
22409275 |
taccaaaatgcatagcacaagagtaatcaacttttgcggaaaatagatatattctaaataatgtt |
22409211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University