View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_25 (Length: 257)
Name: NF13203_low_25
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42894649 - 42894407
Alignment:
| Q |
1 |
ttgtatgtacaatcaagatttatatgaatagttagtt----ttaatttgttgagagtaaatagcaaaatgataaagtggttttgnnnnnnngttacaaaa |
96 |
Q |
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| T |
42894649 |
ttgtatgtacaatcaagatttatatgaatagttagttagttttaatttgttgagagtaaatagcaaaatgataaagtggttttgtttttttgttacaaaa |
42894550 |
T |
|
| Q |
97 |
aagataagtggtttgacctccatacaatgggacccagaatatataaatactcctaaaatataattgaacgaaactaactaatccgtgtgggtcgcgctta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894549 |
aagataagtggtttgacctccatacaatgggacccagaatata--aatact---aaaatataattgaacgaaactaactaatccgtgtgggtcgcgctta |
42894455 |
T |
|
| Q |
197 |
gtagaagggagctaagcaagtatccttcgctttcgtttttcttctcttg |
245 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42894454 |
gtagaagggag-taagcaagtatccttcgctttcgtttttcttctcttg |
42894407 |
T |
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