View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_26 (Length: 254)
Name: NF13203_low_26
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 46159185 - 46158950
Alignment:
| Q |
19 |
gttgatccatcttctacttttgttgcctccctaatctcttgagcaattttttcctgaacatgaggatgcttgcagagttggtaaataaatcaggaaagag |
118 |
Q |
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| T |
46159185 |
gttgatccatcttctacttttgttgcctccctaatctcttgagcaattttttcctgaacatgaggatgcttgcagagttggtaaataaatcaggaaagag |
46159086 |
T |
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| Q |
119 |
tgattgatgttgtatcttttcctgcaatgataaaactcaaaattacgtctttaaggtactttgaatctgtctcattcaattctagaaaccttgacaaaat |
218 |
Q |
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| T |
46159085 |
tgatcgatgttgtatcttttcctgcaatgataaaactcaaaattacgtctttaaggtactttgaatctgtctcattcaattctagaaaccttgacaaaat |
46158986 |
T |
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| Q |
219 |
gtctcctttcaactcgggagagttattttgtggctt |
254 |
Q |
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| T |
46158985 |
gtctcctttcaactcgggagagtttttttgtggctt |
46158950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 46166263 - 46166027
Alignment:
| Q |
18 |
agttgatccatcttctacttttgttgcctccctaatctcttgagcaattttttcctgaacatgaggatgcttgcagagttggtaaataaatcaggaaaga |
117 |
Q |
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||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
46166263 |
agttgatccatcttctactttagttgcctccataatctcctgtgcaattttttcctgaacatgaggatgcttgcaaagttggtaaagaaaccaggaaaga |
46166164 |
T |
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| Q |
118 |
gtgattgatgttgtatcttttcctgcaatgataaaactcaaaattacgtctttaaggtactttgaatctgtctcattcaattctagaaaccttgacaaaa |
217 |
Q |
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| T |
46166163 |
gtgattgctgttgtatcttttcctgcaatgataaaactcaaaattacgtctttaaggtactttgaatctgtctcattcaattctagaaaccttgacaaaa |
46166064 |
T |
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| Q |
218 |
tgtctcctttcaactcgggagagttattttgtggctt |
254 |
Q |
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| T |
46166063 |
tgtctcctttcaactcagaagagttattctgtggctt |
46166027 |
T |
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