View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_27 (Length: 252)
Name: NF13203_low_27
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_27 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 46158533 - 46158775
Alignment:
| Q |
10 |
aacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgtccctaactataagacta |
109 |
Q |
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| T |
46158533 |
aacaatattattgagctgcaggtaaaatgttgtttagtttgaattacagaaaattcttatgatcttcgtaatactacttccgtccctaactataagacta |
46158632 |
T |
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| Q |
110 |
cttttaaattttaactgcattaattaacatacattgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgt |
209 |
Q |
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| T |
46158633 |
cttttaaattttaactatattaattaacatacattgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgt |
46158732 |
T |
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| Q |
210 |
agagctggacacaatgtgtggaacctctaaagaaggcacacaa |
252 |
Q |
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| T |
46158733 |
agagctggacacaatgtgtggaacctctaaagaaggcacacaa |
46158775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 46165743 - 46165852
Alignment:
| Q |
143 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagagctggacacaatgtgtggaacctctaaaga |
242 |
Q |
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| T |
46165743 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagaattggacacaatgtgtggaacctatagaga |
46165842 |
T |
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| Q |
243 |
aggcacacaa |
252 |
Q |
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| T |
46165843 |
aggcacacaa |
46165852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 46165545 - 46165638
Alignment:
| Q |
10 |
aacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgtccctaactata |
103 |
Q |
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| T |
46165545 |
aacaatattattgagctgcaggtaaaattttgcttggtttgaaatacaaaaaattcttatgatcttcgtaatactacctccgtccctaactata |
46165638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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