View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_3 (Length: 595)
Name: NF13203_low_3
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 268 - 574
Target Start/End: Original strand, 10068885 - 10069191
Alignment:
| Q |
268 |
tcattgttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattattgttgggacaaagagagtagtagcatctgatgttggactt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10068885 |
tcattgttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattattgttgggacaaagagagtagtagcatctgatgttggactt |
10068984 |
T |
|
| Q |
368 |
ggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10068985 |
ggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttccatttctg |
10069084 |
T |
|
| Q |
468 |
aaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgt |
567 |
Q |
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| T |
10069085 |
aaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgt |
10069184 |
T |
|
| Q |
568 |
atgtcta |
574 |
Q |
| |
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||||||| |
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| T |
10069185 |
atgtcta |
10069191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 268 - 574
Target Start/End: Original strand, 10106643 - 10106952
Alignment:
| Q |
268 |
tcattgttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattattgttgggacaaagagagtagtagcatctgatgttggactt |
367 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
10106643 |
tcattgttgataaatttagaaaagaagtccaaaaagaagagcaacaaaggaagcaattatagttggaacaaagagagtagtagcatctgatgtaggactt |
10106742 |
T |
|
| Q |
368 |
ggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttct- |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||||||||| |
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| T |
10106743 |
ggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctccatttcta |
10106842 |
T |
|
| Q |
467 |
--gaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaag |
564 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
10106843 |
taaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaatattaag |
10106942 |
T |
|
| Q |
565 |
tgtatgtcta |
574 |
Q |
| |
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|||||||||| |
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| T |
10106943 |
tgtatgtcta |
10106952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 10068594 - 10068844
Alignment:
| Q |
22 |
ccatttcaatttctacatgttcatgattagattttgaatgagaaattgaattaagcctttttaaaaactacataaacaggaagataaaaggagaatatat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10068594 |
ccatttcaatttctacatgttcatgattagattttgaatgagaaattggatta-gcctttttaaaaactacataaacaagaagataaaaggagaatatat |
10068692 |
T |
|
| Q |
122 |
ttaaccaaagaagagggcatgaatgaattcattaatcataacaaataaccacaataatattacaaaatccaattaaaaatccatatgaacat-nnnnnnn |
220 |
Q |
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| T |
10068693 |
ttaaccaaagaagagggcatgaatgaattcattaatcataacaaataatcacaataatattacaaaatccaattaaaaacccatatgaacataaaaaaaa |
10068792 |
T |
|
| Q |
221 |
nnttaaagtgaggaatcaatgtacataataatggtaattgtaaatactcatt |
272 |
Q |
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| T |
10068793 |
aattaaagtgaggaatcaatgtacataagaatggtaattgtaaatactcatt |
10068844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 10075272 - 10075483
Alignment:
| Q |
46 |
gattagattttgaatgagaaattgaattaagcctttttaaaaactacataaacaggaagataaaaggagaatatatt------taaccaaagaagagggc |
139 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||| || | ||||||| ||| | ||||||||| |||| |
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| T |
10075272 |
gattagatttggaatgagaaattgaattaagcc---ttaaaaacatcataaacaagaagagaataagagaatacattgtgtaattaccaaagaaaagggt |
10075368 |
T |
|
| Q |
140 |
atgaatgaattcattaa----tcataacaaataaccacaataatattacaaaatccaattaaaaatccatatgaacatnnnnnnnnnttaaagtgaggaa |
235 |
Q |
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||| ||||||||||||| ||||||||| || ||||| ||||| || ||||||||| ||||||||||| ||||| |||||||||| || |
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| T |
10075369 |
atggatgaattcattaaccatacataacaaa-aatcacaaatatattgcataatccaatt-aaaatccatatcaacatatataaaaattaaagtgagtaa |
10075466 |
T |
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| Q |
236 |
tcaatgtacataataat |
252 |
Q |
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||||||||||||||||| |
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| T |
10075467 |
tcaatgtacataataat |
10075483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 10106473 - 10106510
Alignment:
| Q |
171 |
cacaataatattacaaaatccaattaaaaatccatatg |
208 |
Q |
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||||||||||||||| |||||||||||||| ||||||| |
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| T |
10106473 |
cacaataatattacataatccaattaaaaacccatatg |
10106510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 33252974 - 33252908
Alignment:
| Q |
329 |
gttgggacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacac |
395 |
Q |
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| T |
33252974 |
gttggaacaaaaagtgtggtagcatcagaagttggacttggagctggtgcatcagcagctgaaacac |
33252908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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