View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_low_32 (Length: 237)

Name: NF13203_low_32
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_low_32
NF13203_low_32
[»] chr7 (6 HSPs)
chr7 (1-219)||(27507921-27508139)
chr7 (9-219)||(27516895-27517104)
chr7 (115-219)||(27495445-27495549)
chr7 (115-219)||(27502103-27502207)
chr7 (1-93)||(27495542-27495634)
chr7 (1-93)||(27502200-27502292)
[»] chr8 (1 HSPs)
chr8 (9-58)||(2482748-2482797)
[»] chr2 (1 HSPs)
chr2 (15-67)||(41702326-41702378)
[»] chr3 (2 HSPs)
chr3 (32-62)||(27896340-27896370)
chr3 (33-69)||(43079648-43079684)
[»] chr1 (1 HSPs)
chr1 (30-67)||(24417837-24417874)
[»] chr6 (1 HSPs)
chr6 (7-67)||(33890659-33890719)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 27508139 - 27507921
Alignment:
Q  1 tcacaagtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaatagggacttaattagtaaaagataccacaatctggaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  27508139 tcacaagtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaatagggccttaattagtaaaagataccacaatctggaaa 27508040  T
Q  101 ttctagctgatttaaccacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagtgaaaatagtacttattaatg 200  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27508039 ttctagctgatgcaaacacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagccaaaatagtacttattaatg 27507940  T
Q  201 tatgtatacttcaaagttg 219  Q
    |||||||||||||||||||    
T  27507939 tatgtatacttcaaagttg 27507921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 27517104 - 27516895
Alignment:
Q  9 gcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaatagggacttaattagtaaaagataccacaatctggaagttctagct 108  Q
    |||| ||||||||||||||| | |||||||| ||||| ||| |||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27517104 gcttctatgataagtgtttttgctataagcttcaaatgaagttgtttattcaa-tagggccttaattagtaaaagataccacaatctggaagttctagct 27517006  T
Q  109 gatttaaccacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagtgaaaatagtacttattaatgtatgtata 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||    
T  27517005 gatttaaacacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagccaaaatagtacttattaatgtatgtgta 27516906  T
Q  209 cttcaaagttg 219  Q
    |||||||||||    
T  27516905 cttcaaagttg 27516895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 27495549 - 27495445
Alignment:
Q  115 accacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagtgaaaatagtacttattaatgtatgtatacttcaa 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  27495549 accacaataggtaatagaagaatataaatccatctgaacatatttcaaattaaggaacatattagccaaaatagtacttattaatgtatgtgtacttcaa 27495450  T
Q  215 agttg 219  Q
    |||||    
T  27495449 agttg 27495445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 27502207 - 27502103
Alignment:
Q  115 accacaataggtaatagaagaatataaatccatctaaacatatttcaaattaaggaacatattagtgaaaatagtacttattaatgtatgtatacttcaa 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  27502207 accacaataggtaatagaagaatataaatccatctgaacatatttcaaattaaggaacatattagccaaaatagtacttattaatgtatgtgtacttcaa 27502108  T
Q  215 agttg 219  Q
    |||||    
T  27502107 agttg 27502103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27495634 - 27495542
Alignment:
Q  1 tcacaagtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaatagggacttaattagtaaaagataccacaat 93  Q
    ||||||| |||| |||||||| |||||| | ||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||||||    
T  27495634 tcacaagcgcttgtatgataactgtttttgctataagctgcaaattaagctgtttaaccaaataggtccttaattagtaaaagataccacaat 27495542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27502292 - 27502200
Alignment:
Q  1 tcacaagtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaatagggacttaattagtaaaagataccacaat 93  Q
    ||||||| |||| |||||||| |||||| | ||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||||||    
T  27502292 tcacaagcgcttgtatgataactgtttttgctataagctgcaaattaagctgtttaaccaaataggtccttaattagtaaaagataccacaat 27502200  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 2482797 - 2482748
Alignment:
Q  9 gcttatatgataagtgttttggttataagctgcaaattaagctgtttatc 58  Q
    |||||||||||||||||||  | |||||||| ||||||||||||||||||    
T  2482797 gcttatatgataagtgtttatgctataagcttcaaattaagctgtttatc 2482748  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 41702326 - 41702378
Alignment:
Q  15 atgataagtgttttggttataagctgcaaattaagctgtttatcaaaataggg 67  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| ||| ||||    
T  41702326 atgataagtgtttttgctataagctgaaaattaagctgtttatccaaacaggg 41702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 27896340 - 27896370
Alignment:
Q  32 tataagctgcaaattaagctgtttatcaaaa 62  Q
    |||||||||||||||||||||||||||||||    
T  27896340 tataagctgcaaattaagctgtttatcaaaa 27896370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 43079684 - 43079648
Alignment:
Q  33 ataagctgcaaattaagctgtttatcaaaatagggac 69  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  43079684 ataagctgcaaattaagctgtttatccaaacagggac 43079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 24417837 - 24417874
Alignment:
Q  30 gttataagctgcaaattaagctgtttatcaaaataggg 67  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  24417837 gttataagctgcaaattaacctgtttatccaaataggg 24417874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 33890719 - 33890659
Alignment:
Q  7 gtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaataggg 67  Q
    |||||||||||||||||||||  | ||||||||||||| |||| | |||||| ||| ||||    
T  33890719 gtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 33890659  T

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