View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_34 (Length: 213)
Name: NF13203_low_34
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 38226998 - 38226796
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226998 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
38226899 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaacattattttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226898 |
ttgcaaggtaaatgaattcattaagaaacattagtttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatg |
38226799 |
T |
|
| Q |
201 |
atg |
203 |
Q |
| |
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||| |
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|
| T |
38226798 |
atg |
38226796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38253728 - 38253597
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
38253728 |
attgggatgattttatagtgcctgttaagatatatataattgatgttactgatactttgaaaccatcagatgattcaaaagaattgaactcagaccatga |
38253629 |
T |
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| Q |
101 |
ttgcaaggtaaatgaattcattaagaaacatt |
132 |
Q |
| |
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||||||||||| | |||||||||||||||||| |
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| T |
38253628 |
ttgcaaggtaagtaaattcattaagaaacatt |
38253597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 38238527 - 38238349
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | ||||| |
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| T |
38238527 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaactcagatcatga |
38238428 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaacattattttttagaaatagattccgtgtagttgggctaccctagattcacgca |
181 |
Q |
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||||||||||||| |||||||| ||||||| ||| | ||||| | ||||||||||||||| | |||| ||||||||| |
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| T |
38238427 |
ctgcaaggtaaatgcattcattacgaaacat--gtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgca |
38238349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 38214575 - 38214412
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
38214575 |
attgggatgattttattgtgcctgtgaagatatatataattgatgttactgatagtttgaaaccatcagatgattcaaaaggattgaactcggatcatga |
38214476 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaac-attattttttagaaatagattccgtgtagttggg |
163 |
Q |
| |
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||||||||||||||||||||| ||||||| | || ||| | ||||| |||||| |||||||||| |
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|
| T |
38214475 |
ttgcaaggtaaatgaattcatcaagaaactagtagtttgtggaaatggattccatgtagttggg |
38214412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38220617 - 38220488
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | ||||| |
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| T |
38220617 |
attgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaactcagaacatga |
38220518 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaaca |
130 |
Q |
| |
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|||||||||||| ||||||| |||||||| |
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| T |
38220517 |
ttgcaaggtaaacaaattcatcaagaaaca |
38220488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 38248613 - 38248454
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||| |||| || |||||||| ||||||||||||||||||| |||| ||| | ||||| |
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| T |
38248613 |
attgggatgattttatagtgcccgttaagatatatataattgatgtcactggtagtttgaaactatcagatgattcaaaaggaatgaaatcagatcatga |
38248514 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaaca-ttattttttagaaatagattccgtgtagt |
159 |
Q |
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|||||||||||||| |||||| |||||||| ||| ||| | ||||||||||||||||||| |
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|
| T |
38248513 |
ttgcaaggtaaatgcattcatcaagaaacatttagtttgtggaaatagattccgtgtagt |
38248454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38243465 - 38243336
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||||| |||| | |||||| ||||||| | ||||||||| ||||| | ||||| |
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| T |
38243465 |
attgggatgattttatagtgcctcttaagatatatgtaattgatgttaccgatagtatgaaacaatcagataactcaaaaggaacgaactttgatcatga |
38243366 |
T |
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| Q |
101 |
ttgcaaggtaaatgaattcattaagaaaca |
130 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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| T |
38243365 |
ttgcaaggtaaatgaattcatcaagaaaca |
38243336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 17434128 - 17433958
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||| |||| |||| |||||||||||||| ||||||| | ||||| |
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|
| T |
17434128 |
attgggatgattttatagtgcctgttaaggcatacataattgatgttactgatagtttaaaactatcaaatgattcaaaaggaacgaactcagatcatga |
17434029 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcattaagaaacat-tattttttagaaatagattccgtgtagttgggctaccct |
170 |
Q |
| |
|
||| ||||||||||| ||||| ||||| ||| | ||| | ||||| ||||||||||||||||| |||||| |
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|
| T |
17434028 |
ttgtaaggtaaatgatttcatcaagaatcatgttgtttgttgaaatggattccgtgtagttgggataccct |
17433958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 17455228 - 17455108
Alignment:
| Q |
1 |
attgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatga |
100 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| ||| ||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | ||||| |
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| T |
17455228 |
attgggatgaatttatagttcctcttaagacatacataattgatgttactgatagtttgaaactatcagatgattcaaaaggaatgaactcagatcatga |
17455129 |
T |
|
| Q |
101 |
ttgcaaggtaaatgaattcat |
121 |
Q |
| |
|
||| ||||||||||| ||||| |
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|
| T |
17455128 |
ttgtaaggtaaatgatttcat |
17455108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 11479291 - 11479381
Alignment:
| Q |
21 |
cctgttaagatatatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaa |
111 |
Q |
| |
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||||||||||| |||||| ||||||| |||||||||||||| |||||| | || |||||| ||| ||||||||||||||||||||| |
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| T |
11479291 |
cctgttaagatttatatatttgatgtgactgatactttgaagatttcagataagtccaaaggaatgagaccaaaccatgattgcaaggtaa |
11479381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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