View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13203_low_4 (Length: 583)
Name: NF13203_low_4
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13203_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 30517650 - 30518197
Alignment:
| Q |
18 |
agtaagcagtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517650 |
agtaagcagtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaa |
30517749 |
T |
|
| Q |
118 |
taatactcaaatatatatctttagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcga |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30517750 |
taatactcaaatatatatctatagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-a |
30517848 |
T |
|
| Q |
218 |
aaaacttgtgtcttaattaatctttgatcaactccttaataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaa |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517849 |
aaaacttgtgtgttaattaatctttgatcaactccttcataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaa |
30517948 |
T |
|
| Q |
318 |
aaacaacatattattcaagttacctaaccacctataaacttgatccttatatcagatatataattttttggtaaactaagatatctccgc-aacatctgt |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30517949 |
aaacaacatattattcaagttacctaaccacctttaaactcgatccttatatcagatatataattttttggtaaactaagatatctccgcaaacatctgc |
30518048 |
T |
|
| Q |
417 |
tgagactaattcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgagcagaataacatagagatggatggataggcagttagtt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
30518049 |
tgagactaattcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgatcagaataacatagagatggatggataggcagtta-at |
30518147 |
T |
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| Q |
517 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30518148 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
30518197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 566
Target Start/End: Original strand, 38895856 - 38895906
Alignment:
| Q |
516 |
ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
566 |
Q |
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| T |
38895856 |
ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccaca |
38895906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 42898424 - 42898371
Alignment:
| Q |
517 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccacaggtt |
570 |
Q |
| |
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|||||||| |||| ||||||||||||||| |||||||||| || ||||||||| |
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| T |
42898424 |
taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt |
42898371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 36989466 - 36989417
Alignment:
| Q |
517 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
566 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
36989466 |
tacctggaaaagatggttccacagtcacatttgtattcccttgtaccaca |
36989417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 28496106 - 28496155
Alignment:
| Q |
517 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
566 |
Q |
| |
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|||||||| |||| || ||||||||||||||||||||||| |||||||| |
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| T |
28496106 |
taccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca |
28496155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 44150800 - 44150849
Alignment:
| Q |
517 |
taccttgaaaagatagttccacagtcacatttgtattctctagtaccaca |
566 |
Q |
| |
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||||| ||||| || |||||||| |||||||||||||| ||||||||||| |
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| T |
44150800 |
tacctagaaaatatggttccacaatcacatttgtattccctagtaccaca |
44150849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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