View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13203_low_5 (Length: 528)

Name: NF13203_low_5
Description: NF13203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13203_low_5
NF13203_low_5
[»] chr8 (2 HSPs)
chr8 (291-481)||(25000581-25000771)
chr8 (99-289)||(25000243-25000430)
[»] scaffold0051 (3 HSPs)
scaffold0051 (17-62)||(34524-34569)
scaffold0051 (16-62)||(38893-38939)
scaffold0051 (17-62)||(22950-22995)
[»] chr4 (2 HSPs)
chr4 (17-62)||(16418386-16418431)
chr4 (17-62)||(553103-553148)
[»] chr1 (2 HSPs)
chr1 (17-62)||(17532038-17532083)
chr1 (17-62)||(17536460-17536505)
[»] chr6 (2 HSPs)
chr6 (17-62)||(26617441-26617486)
chr6 (17-62)||(26723369-26723414)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 291 - 481
Target Start/End: Original strand, 25000581 - 25000771
Alignment:
Q  291 gacacatatgaaatttcatttcttcgtttgtgaaagaaatattcaactagcaggtatacgtcactcatttcttcctcaacttcagtatcatcatatgcta 390  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25000581 gacacacatgaaatttcatttcttcgtttgcgaaagaaatattcaactagcaggtataggtcactcatttcttcctcaacttcagtatcatcatatgcta 25000680  T
Q  391 catcttgctctacaactagtgtgttacaatgctccttaggattattagtggtgtttgcactaaatgtagtcgtttcgctatccgtgagttt 481  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  25000681 catcttgatctacaactagtgtgttacaatgctccttaggattattagtgttgttcgcactaaatgtagtcatttcgctatccgtgagttt 25000771  T

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Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 25000243 - 25000430
Alignment:
Q  99 ggaattgtggtgtacaatgtttccatagtttctttgacatgtccttctttgataccttccttcgatgagcttgttgtttgtacttcttctacaagttttg 198  Q
    |||||| |||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||  |||||    
T  25000243 ggaattatggtgtacaatgtttccatagtttctttgacatgtcctt---tgatagcttccttcgatgagcttgttgtttgtacttcttctacattttttg 25000339  T
Q  199 acacggtgttggtttaaggtggaacttgtggatatggtaataccttatgtacttgatattcgacattatcatcttgtggcggatcgttctc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  25000340 acacagtgttggtttaaggtggaacttgtggatatggtaataccttatgtacctgatattcgacattgtcatcttgtggcggatcgttctc 25000430  T

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Target: scaffold0051 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 34524 - 34569
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34524 acatttttccaatacaagcatttatgatacaacacattactcaaca 34569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 38893 - 38939
Alignment:
Q  16 cacatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38893 cacatttttccaatacaagcatttatgatacagcacattactcaaca 38939  T

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Target: scaffold0051; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 22950 - 22995
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  22950 acatttttccaatacaagcatttatgatacagcacattactcaaca 22995  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 16418386 - 16418431
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16418386 acatttttccaatacaagcatttatgatacaacacattactcaaca 16418431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 553103 - 553148
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  553103 acatttttccaatacaagcatttatgatacagcacattactcaaca 553148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17532038 - 17532083
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17532038 acatttttccaatacaagcatttatgatacaacacattactcaaca 17532083  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17536460 - 17536505
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||||    
T  17536460 acattttttcaatacaaacatttatgatacagcacattactcaaca 17536505  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26617486 - 26617441
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||    
T  26617486 acatttttccaatacaagcatttatggtacagcacattactcaaca 26617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26723414 - 26723369
Alignment:
Q  17 acatttttccaatacaagcatttatgatacaacacattactcaaca 62  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||    
T  26723414 acatttttccaatacaagcatttatggtacagcacattactcaaca 26723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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