View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_high_11 (Length: 296)
Name: NF13204_high_11
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 5333551 - 5333825
Alignment:
| Q |
1 |
aaaaggcttaatcaaaattgcattcgcaggttgattcgaaaacgaaactggattatcatcaacaataacaaccttcttcaaatctcttcccacaaaaccc |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333551 |
aaaaggcttaatcaaaatcgcatttgcaggttgattcgaaaacgaaactggattatcatcaacaataacaaccttcttcaaatctcttcccacaaaaccc |
5333650 |
T |
|
| Q |
101 |
aaatctttcacaagcttcccatcaacattcctacacgaatccctataaagccgatgcgaaataaacccattccggtccagccggtccacaaccaaactcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333651 |
aaatctttcacaagcttcccatcaacattcctacacgaatccctataaagccgatgcgaaataaacccattccggtccagccggtccacaaccaaactcg |
5333750 |
T |
|
| Q |
201 |
catactccttcaacgcagctgtaaaaaccaccacctcatatttcaacgctaacgcttccaacaattcgtcaatcc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5333751 |
catactccttcaacgcagctgtaaaaaccaccacctcatatttcaacgctaacgcttccaacagttcgtcaatcc |
5333825 |
T |
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