View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13204_high_17 (Length: 210)

Name: NF13204_high_17
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13204_high_17
NF13204_high_17
[»] chr5 (3 HSPs)
chr5 (4-190)||(42524019-42524216)
chr5 (4-190)||(42517365-42517561)
chr5 (105-190)||(42508015-42508100)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 42524019 - 42524216
Alignment:
Q  4 tctcgcatgtccaagaatattttaggttatataa--------atagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagat 95  Q
    |||||||||||| | |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42524019 tctcgcatgtcctataatattttaggttatataatatgaacaatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagat 42524118  T
Q  96 aaactaatta---tgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 190  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42524119 aaactaattactatgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 42524216  T

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Target: chr5; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 42517365 - 42517561
Alignment:
Q  4 tctcgcatgtccaagaatattttaggttatataa--------atagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagat 95  Q
    |||||||||||| | |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517365 tctcgcatgtcctataatattttaggttatataatatgaacaatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagat 42517464  T
Q  96 aaactaat--tatgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 190  Q
    |||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517465 aaacaattactatgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 42517561  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 42508015 - 42508100
Alignment:
Q  105 atgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 190  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42508015 atgtctttttacaggttttgggtggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttg 42508100  T

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