View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_high_5 (Length: 505)
Name: NF13204_high_5
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_high_5 |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 18257547 - 18257728
Alignment:
| Q |
17 |
agaaagcattaatagtaacaaacaataaaacaaaaatatgcttcgcctttacattttatattgatctattggatatcaccatgtatatttgaatcaaggt |
116 |
Q |
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| T |
18257547 |
agaaagcataaatagtaacaaacaataaaacaaaaatatccttcgcctttatattttatattgatctattggatatcaccatgtatatttgaatccaggt |
18257646 |
T |
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| Q |
117 |
atggttgttatcaagtgaaaataga--atatataagaaggcaaaaactgaacaaaaatgtcgtattcttggaaattataatt |
196 |
Q |
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| T |
18257647 |
atggttgttatcaagtgaaaatagaatatatataagaaggcaaaaactgaacaaaattgtcctattcttgaacattataatt |
18257728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 18258550 - 18258663
Alignment:
| Q |
289 |
ataacttgtttaaataattaaagttgttgacctcagcgacactctgtgagactagttttcagtttgagacttaagtcctgtttggtaaaaactgccaaaa |
388 |
Q |
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| T |
18258550 |
ataatttgttaaaacaattaaagttgttgacctcagtgacactttgcgagactagttttcggtttaagacttgggt-ctatttggtaaaaactaccagaa |
18258648 |
T |
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| Q |
389 |
taataaattataagt |
403 |
Q |
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| T |
18258649 |
tagtaaaatataagt |
18258663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 503
Target Start/End: Complemental strand, 11956847 - 11956762
Alignment:
| Q |
419 |
tatttttgtatttaaaa-ttcagaaactactaccgaagagattatcggattgagtcactatcagatcgctatttttaagacgtttc |
503 |
Q |
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| T |
11956847 |
tattttcgtatttaaaaattcagaaactactaccgaagagattatcgggttgagtcatgaccaggtcgctctctttaagacgtttc |
11956762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 502
Target Start/End: Original strand, 29325496 - 29325569
Alignment:
| Q |
429 |
tttaaaattcagaaactactaccgaagagattatcggattgagtcactatcagatcgctatttttaagacgttt |
502 |
Q |
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| T |
29325496 |
tttaaaaatcagaaactactaccaaagtaattaccgggttgagtcacgatcaagtcgctctttttaagacgttt |
29325569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 504
Target Start/End: Original strand, 6024069 - 6024155
Alignment:
| Q |
419 |
tatttttgtatttaaaa-ttcagaaactactaccgaagagattatcggattgagtcactatcagatcgctatttttaagacgtttcg |
504 |
Q |
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| T |
6024069 |
tattttcgtatttaaaaattcagaaactactaccgaagagattactgggttgattcatgaccaggtctctctttttaagacgtttcg |
6024155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 21494434 - 21494369
Alignment:
| Q |
432 |
aaaattcagaaactactaccgaagagattatcggattgagtcactatcagatcgctatttttaaga |
497 |
Q |
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| T |
21494434 |
aaaattcagaaactactaccgaagggattactggattgagtcacgaccaggtcgctctctttaaga |
21494369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 34093 - 34028
Alignment:
| Q |
439 |
agaaactactaccgaagagattatcggattgagtcactatcagatcgctatttttaagacgtttcg |
504 |
Q |
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| T |
34093 |
agaaactactaccgaaaaaattatcgggttgagtcacgaccaggtcgctctctttaagacgtttcg |
34028 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 503
Target Start/End: Original strand, 39319613 - 39319666
Alignment:
| Q |
450 |
ccgaagagattatcggattgagtcactatcagatcgctatttttaagacgtttc |
503 |
Q |
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| T |
39319613 |
ccgaagagattaccgggttgagtcacgatcaggtcgctttctttaagacgtttc |
39319666 |
T |
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