View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_high_6 (Length: 455)
Name: NF13204_high_6
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 3569310 - 3568887
Alignment:
| Q |
13 |
aaaatcctaaataaacaaagggtccgcaataataattaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatata |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569310 |
aaaatcctaaataaacaaagggtccgcaataataactaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatata |
3569211 |
T |
|
| Q |
113 |
ggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3569210 |
ggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttcttgttgtcgtaatttctgtt |
3569111 |
T |
|
| Q |
213 |
tttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaattccatatcacgttgaatatttgg |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3569110 |
tttgcttcttggacaaaaccagcgtgaatagatcttccactgccttttgatcgtactcccgaattctatgccac--ttccatatcacgttgaatatttgg |
3569013 |
T |
|
| Q |
313 |
gttgttgtgataaactataatttcactttgcggacctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctacta |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3569012 |
gttgttgtgataaactataatttcactttgcggacctgtgttactattatgaactatatcatctgccaaaaaaccaggttgaaccgcaagcatgctacta |
3568913 |
T |
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| Q |
413 |
tcttcagacatgacggtacctgaatt |
438 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3568912 |
tcttcagacatgacggtacctgaatt |
3568887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 91 - 344
Target Start/End: Original strand, 34215439 - 34215684
Alignment:
| Q |
91 |
ttaccttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggact |
190 |
Q |
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||||| || ||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||| |
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| T |
34215439 |
ttaccgtgagcattccaatataggacagtcattgggcacttggagatgaagcac-ccct-------tgagcaggttctatacggcggtttcccaaggaca |
34215530 |
T |
|
| Q |
191 |
tgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaatt |
290 |
Q |
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||| |||||| |||||| ||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||| || ||| |||| |
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| T |
34215531 |
tgttgttgtctgaatttcagtttttgcttcttggacaaaaccggtgtgaatggatcttccgctgccttttgatcgtactcccgaattcgattccataatt |
34215630 |
T |
|
| Q |
291 |
ccatatcacgttgaatatttgggttgttgtgataaactataatttcactttgcg |
344 |
Q |
| |
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|||||||||||||||||||||||| ||| || ||||| |||||||||||||| |
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| T |
34215631 |
ccatatcacgttgaatatttgggtcactgtaatgaactaaaatttcactttgcg |
34215684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 34215364 - 34215396
Alignment:
| Q |
35 |
tccgcaataataattaacactggtttatgagac |
67 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
34215364 |
tccgcaataataattaacaatggtttatgagac |
34215396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 104 - 341
Target Start/End: Complemental strand, 11213285 - 11213059
Alignment:
| Q |
104 |
tccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgta |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||| || |||||| |||||| |||||||| | |
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| T |
11213285 |
tccaatataggacaatcattgggcacttggagatgaa--------tcaccccttgaacgggttctataccgcagtttcccaaggaca---cgttgtcgca |
11213197 |
T |
|
| Q |
204 |
atttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaattccatatcacgttg |
303 |
Q |
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|||||||||||||||||||||| |||||| |||||| | ||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11213196 |
atttctgtttttgcttcttggataaaaccggtgtgattggatctcccgctgccttttgatcgtactcccgaattctattccacaattccatatcacgttg |
11213097 |
T |
|
| Q |
304 |
aatatttgggttgttgtgataaactataatttcacttt |
341 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||||| |
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| T |
11213096 |
aatatttgggttgctctgatgaactaaaatttcacttt |
11213059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 70 - 321
Target Start/End: Complemental strand, 35222780 - 35222531
Alignment:
| Q |
70 |
aaagcaactcttgtgcccgagtt------accttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgg |
163 |
Q |
| |
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||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||| |||||||||| |||| || ||||||| |
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| T |
35222780 |
aaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgag--------tcaccccttgagcgg |
35222689 |
T |
|
| Q |
164 |
gttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgat |
263 |
Q |
| |
|
|||| ||| ||||| |||| ||| | |||| |||| || ||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| |
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| T |
35222688 |
gttcaatatggcggcttcccaagaatttgttgttgccgcaatttctgtttttgcttcttggacaaaacaagagtaaatggatcttcctttcccttttgat |
35222589 |
T |
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| Q |
264 |
cgtactcccgaattctatgccacaattccatatcacgttgaatatttgggttgttgtg |
321 |
Q |
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||||||| |||||||||| ||||||||||||||| || ||||||||||||| |||| |
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|
| T |
35222588 |
cgtactctcgaattctatttcacaattccatatcatgtcaaatatttgggttgctgtg |
35222531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 17368122 - 17368047
Alignment:
| Q |
157 |
tgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaacc |
232 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
17368122 |
tgagcgggttttatacggcggtttcccaaggacatgttgttgtcgcaatttctgtttttgcttcttggacaaaacc |
17368047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 23050381 - 23050337
Alignment:
| Q |
37 |
cgcaataataattaacactggtttatgagacggaaagcaactctt |
81 |
Q |
| |
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||||||||||||||||| ||| ||| ||||| ||||||||||||| |
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|
| T |
23050381 |
cgcaataataattaacaatggcttaagagacagaaagcaactctt |
23050337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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