View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_low_10 (Length: 362)
Name: NF13204_low_10
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 26388227 - 26388582
Alignment:
| Q |
1 |
aattggttttttagcatattcttcacatgtcatatgagtttctttttagagtcctctgtacaccataatttggtgacttgtctattagtcgttgttctgc |
100 |
Q |
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| T |
26388227 |
aattggttttttggcatattcttcacatgtcatatgagtttctttttagagtcctctgtacatcatgatttggtgacttgtctattagtcgttgttctgc |
26388326 |
T |
|
| Q |
101 |
catatctttacatgttgcatttggttgtctccttttattgactagatggnnnnnnnnatgtgctattcatcttgagcacaatctgagtattgatgcttca |
200 |
Q |
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| T |
26388327 |
catatc-ttacatgttgcatttggttgtctccttttattgactagatggttttttttatgtgctattcatcttgagcacaatctgagtattgatgcttca |
26388425 |
T |
|
| Q |
201 |
ctttatagtcatcaaccatgatcttttgctcannnnnnnnatatgaattgttgagtcctctgatgtgctaagtatcctttagcacaacttgagtattgtg |
300 |
Q |
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| T |
26388426 |
ctttatagtcatcaaccatgatcttttgctcattttttttatatgaattgttgagtcctctgatgtgctaagtatcctgtagcacaacttgagtattgtt |
26388525 |
T |
|
| Q |
301 |
catcactttgtagccgtcaagaccttccaacattcatttttcttctcctttgcttct |
357 |
Q |
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| T |
26388526 |
catcactttgtagccgtcaagatcttccaacattcatttttcttctccttggcttct |
26388582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 1774001 - 1773920
Alignment:
| Q |
278 |
tttagcacaacttgagtattgt-gcatcactttgtagccgtcaagaccttccaacattcat-ttttcttctcctttgcttct |
357 |
Q |
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| T |
1774001 |
tttagcacaacttgagtattgttgcttcattttgtagtcgtcaagaccttctaacattcattttttcttcttcttagcttct |
1773920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 1774078 - 1774021
Alignment:
| Q |
173 |
tgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgct |
230 |
Q |
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| T |
1774078 |
tgagcacaatctgagtattgatgcttcactcaatagccatcaaccatgctcctttgct |
1774021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 19473318 - 19473232
Alignment:
| Q |
255 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
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| T |
19473318 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19473232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 19544243 - 19544157
Alignment:
| Q |
255 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
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|
|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
19544243 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19544157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 19588453 - 19588539
Alignment:
| Q |
255 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
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| T |
19588453 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19588539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 19473371 - 19473325
Alignment:
| Q |
295 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
19473371 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19473325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 19544296 - 19544250
Alignment:
| Q |
295 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19544296 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19544250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 19588400 - 19588446
Alignment:
| Q |
295 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
341 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19588400 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19588446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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