View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_low_4 (Length: 677)
Name: NF13204_low_4
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 40633892 - 40633456
Alignment:
| Q |
17 |
aatatccatgtccacttattcctaaatcatgtcaattgtcatgtctccctcaacaaagaaaaaa--tgtctattgtcatgtcatgtatgccattagcaaa |
114 |
Q |
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| T |
40633892 |
aatatctacgtccacttatttccaaatcatgtcaattttcatgtctccctcaacaacaaaaaaaagtgtctattgtcatgtcatgtatgccattagcaaa |
40633793 |
T |
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| Q |
115 |
aagtgcaaaaggtcggaatttacggtacatgtatatggagatcatttgggtgatat---------------tggttatccataatatcacaatggctttc |
199 |
Q |
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| T |
40633792 |
aagtgcaaaaggtcggaatttacggtgcatgtatatggagagcatttgggtgatataacatttgatgatattggtcatccacaatatcacaatgactttc |
40633693 |
T |
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| Q |
200 |
ttctctctttttcacaaggttttttcatttaacatttataactttgtggttgatcaatgttactaattgctatgtcacccaagt-ctgccccgtgttacg |
298 |
Q |
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| T |
40633692 |
ttctctctttt-cacaaagttttttcatttaacatttataactttgtggttgactaatgtcactaaatactatgtcacccaagtactaccccatgttacg |
40633594 |
T |
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| Q |
299 |
caaaaccaaactatgtgcagtcagtaacaacacatattagacgtctacgtgaattgttgtttgattagccttacaaaagaaaggtaggaggacccctgtt |
398 |
Q |
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| T |
40633593 |
cgaaaccaaactatgtgcagttagtaacaatacatattagacgtctacgtgaattgttgtttgattagccttacaaaagaaaggtaggaggacccctgtt |
40633494 |
T |
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| Q |
399 |
gaataaagtggagatgtatgaacgtgggagaagaggta |
436 |
Q |
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| T |
40633493 |
gaataaagtggagatgtatgaatgtgggagaagaggta |
40633456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 534 - 665
Target Start/End: Original strand, 40634010 - 40634154
Alignment:
| Q |
534 |
ctttctctctgttatatgtgatcaatcaaaagaaagaaagaaaatgtcatgatt----------tattactgtaat---gttggtcatttttccactcat |
620 |
Q |
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| T |
40634010 |
ctttctctctgttatatttgatcaatcaaaagaaagaaagaaaatgtcatgattctacaaatattattactctaataatgttggtcatttttccactcat |
40634109 |
T |
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| Q |
621 |
gtagtgtaagtgacacacatagcatccacaatcgagagatatatt |
665 |
Q |
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| T |
40634110 |
gtagtgtaagtgacacccatagcatccacaatcgagagagatatt |
40634154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 40633909 - 40633947
Alignment:
| Q |
431 |
gaggtaatatgggacccatttaatgtaaacaagagcgtg |
469 |
Q |
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| T |
40633909 |
gaggtaatatgggacccatttaatgtaaataagagcgtg |
40633947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 32315801 - 32315769
Alignment:
| Q |
192 |
tggctttcttctctctttttcacaaggtttttt |
224 |
Q |
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| T |
32315801 |
tggctttcttctctctttttcataaggtttttt |
32315769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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