View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_low_8 (Length: 396)
Name: NF13204_low_8
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_low_8 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 41930191 - 41929822
Alignment:
| Q |
18 |
caacttgtatataaggttaaaccaaaccaaaccaagatataaggttgagtattgtcaaattatgattattaatgcataaaa-gaaaagttatgagttact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |
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| T |
41930191 |
caacttgtatataaggttaaaccaaaccaaaccaagatataaggttgagtattgtcaaattatgattattaacgtatatggtgaaaagttatgcgttact |
41930092 |
T |
|
| Q |
117 |
tccttatatttaacgcatataaactaaaagttctgagtttatatttgtttaatgttaaatcttattcaagtcatagtatataccaacttaacatgatcat |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41930091 |
tccttatatttaacgcatataaactaaaagttatgagtttatatttgtttactgtgaaatcttattcaagtcatagtatatacaaacttaacatgatcat |
41929992 |
T |
|
| Q |
217 |
ttataaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgt |
316 |
Q |
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||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
41929991 |
ttataaagtttatgacacagaaaggtaaacaaaatt----aacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagtatgtagaacctgt |
41929896 |
T |
|
| Q |
317 |
atcttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacatatttcttcttctctc |
390 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41929895 |
atcttcttgtagtagccaaaattgtttgaactggtcctccacgtgatatccacaaacgtatttcttcttctctc |
41929822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 99 - 390
Target Start/End: Original strand, 60089 - 60380
Alignment:
| Q |
99 |
gaaaagttatgagttacttccttatatttaacgcatataaactaaaagttctgagtttatatttgtttaatgttaaatcttattcaagtcatagtatata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
60089 |
gaaaagttatgagttacttccttatatttaacgcatataaactaaaagttatgagtttataattgtttactgttaaatcttattgaagtcatagtatata |
60188 |
T |
|
| Q |
199 |
ccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60189 |
ccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatg |
60288 |
T |
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| Q |
299 |
aaagttagtggaacctgtatcttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacatatttcttcttctctc |
390 |
Q |
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| T |
60289 |
aaagttagtggaacctgtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctc |
60380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 99 - 390
Target Start/End: Original strand, 50336 - 50632
Alignment:
| Q |
99 |
gaaaagttatgagttacttccttatatttaacgcatataaactaaaagttctgagtttatatttgtttaatgttaaatcttattcaagtcatagtatata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
50336 |
gaaaagttatgagttacttccttatatttaacgcatataaactaaaagttatgagtttatagttgtttactgttaaatcttattgaagtcatagtatata |
50435 |
T |
|
| Q |
199 |
ccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatcc-----aaagaataatgcaaagtaatt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
50436 |
ccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaattaaagaataatgcaaaataatt |
50535 |
T |
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| Q |
294 |
taatgaaagttagtggaacctgtatcttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacatatttcttcttctctc |
390 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50536 |
taatgaaagttagtggaacctgtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctc |
50632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 254 - 390
Target Start/End: Original strand, 209715 - 209852
Alignment:
| Q |
254 |
accaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagcc-aaaattgtttgaaatggtc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
209715 |
accaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaaattgtttgaaatggtc |
209814 |
T |
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| Q |
353 |
ctccacgtgatatccacaaacatatttcttcttctctc |
390 |
Q |
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||||| ||||||| |||||| || ||||||||||||| |
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| T |
209815 |
ttccacatgatatcgacaaacgtaattcttcttctctc |
209852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 209651 - 209697
Alignment:
| Q |
18 |
caacttgtatataaggttaaaccaaaccaaaccaagatataaggttg |
64 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
209651 |
caacttgtatacaaggttaaaccaaaccaaaccaagatataaggttg |
209697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 17862 - 17776
Alignment:
| Q |
176 |
tcttattcaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttg |
262 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17862 |
tcttattcaagtcatattatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttg |
17776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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