View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13204_low_9 (Length: 393)
Name: NF13204_low_9
Description: NF13204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13204_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 41307436 - 41307056
Alignment:
| Q |
10 |
aacctgtgctaccaacaagtaactttctatgagttgtaccgtgcaagaaaaaagttgaaacagctacggttatgcagaacacaagtagaacaggtgtcgt |
109 |
Q |
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| T |
41307436 |
aacctatgctaccaacaagtaactttctatgagttgtatcgtgcaagaaaaaagttgaaacagctacggttatgcagaacacaagtagaacaggtgtcgt |
41307337 |
T |
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| Q |
110 |
gatcatagctaccttcaccctcatattgcaatccaacataaatatcattagtcactttctacctatcttattttttaatcatgcgtgtagataactagat |
209 |
Q |
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| T |
41307336 |
gatcatagctaccttcaccttcatattgcaatacaacataaatatcattagtcactttctacctatcttattttttaatcatgcgtgtagataactagat |
41307237 |
T |
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| Q |
210 |
atagtaaaaaattaaacatgcacttt--aaaaaattagttaaatagaagaataccccatcaac---------ttaatt--aataaataatgtaatgaaaa |
296 |
Q |
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| T |
41307236 |
atagtaaaaaattaaacatgcaatttaaaaaaaattagttaaatagaagaataccccatcaacgtcatcattttaattaaaaaaaataatgtaatgaaaa |
41307137 |
T |
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| Q |
297 |
cttcatgttgatgatgctttaattaattacctttcctttaggcgaagaataccagaagtatataagaacataggataactc |
377 |
Q |
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| T |
41307136 |
cttcatgttgatgatgctttaattaattacctttcctttaggcgaagaataccagaagtatataagaacataggataactc |
41307056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 41297619 - 41297501
Alignment:
| Q |
10 |
aacctgtgctaccaacaagtaactttctatgagttgtaccgtgcaagaaaaaagttgaaacagctacggttatgcagaacacaagtagaacaggtgtcgt |
109 |
Q |
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| T |
41297619 |
aacctatgcttccaacaagtaactttctgtgagctgtatcatggaatgaaaaagctgaaacagctgcaactatgcagaacacaagcagaacaggtgtcat |
41297520 |
T |
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| Q |
110 |
gatcatagctaccttcacc |
128 |
Q |
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| T |
41297519 |
gatcatcgccaccttcacc |
41297501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 41297256 - 41297194
Alignment:
| Q |
315 |
ttaattaattacctttcctttaggcgaagaataccagaagtatataagaacataggataactc |
377 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| || || |||||||| |||||||| |
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| T |
41297256 |
ttaactaattacctttcctttgggcgaagaataccagaaataaatgagaacataagataactc |
41297194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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