View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13205_high_2 (Length: 576)
Name: NF13205_high_2
Description: NF13205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13205_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 5 - 576
Target Start/End: Complemental strand, 31699852 - 31699281
Alignment:
| Q |
5 |
caaaggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaaaaggagtatgggagc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699852 |
caaaggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaaaaggagtatgggagc |
31699753 |
T |
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| Q |
105 |
ccaaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699752 |
ccaaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtc |
31699653 |
T |
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| Q |
205 |
aagagcaataccttttctttgcagattggatcttgttgggaggatattcttagccagccgccacatgaaatttttaatcttatttggaatcgaagctttc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699652 |
aagagcaataccttttctttgcagattggatcttgttgggaggatattcttagccagccgccacatgaaatttttaatcttatttggaatcgaagctttc |
31699553 |
T |
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| Q |
305 |
caaattgctttccacaatctttcgtctctgtgagaggacggcccaggctgaaggttttctctatgattactcatcaagtggtatgcagaccgaacagaat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31699552 |
caaattgctttccacaatctttcgtctctgtgagaggacggcccaggctgaagattttctctatgattactcatcagatggtatgcagaccgaacagaat |
31699453 |
T |
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| Q |
405 |
agcatccatctttctcccaatgccagcacaacttgtctttcgggaatcttagggaaatagggatactaacaattttgagagcttcctgcctgttaaaact |
504 |
Q |
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| T |
31699452 |
agcatccatctttctcccaatgccagcacaacttgtctttcgggaatcttagggaaatagggatactaacaattttgagagcttcctgcctgttaaaact |
31699353 |
T |
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| Q |
505 |
gtggtaaattagagacctattccattgcctagtgtctagatccagaagctcctccactaaagcatcttcccc |
576 |
Q |
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| T |
31699352 |
gtggtaaattagagacctattccattgcctagtgtctagatccagaagctcctccactaaagcatcttcccc |
31699281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 432
Target Start/End: Original strand, 29783119 - 29783312
Alignment:
| Q |
239 |
gttgggaggatattcttagccagccgccacatgaaatttttaatcttatttggaatcgaagctttccaaattgctttccacaatctttcgtctctgtgag |
338 |
Q |
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| T |
29783119 |
gttgggaggatgttctttgccaaacgccacatgaagtttttcactttattaggaatgattgccttccaaatttctttccagagtctctcgtttctgtggt |
29783218 |
T |
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| Q |
339 |
aggacggcccaggctgaaggttttctctatgattactcatcaagtggtatgcagaccgaacagaatagcatccatctttctcccaatgccagca |
432 |
Q |
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| T |
29783219 |
aggatggtcccggctggaggttttctctttttttgctcaataagtggtaagccgaccgtactgaatagcagccatctttctcccaatgccagca |
29783312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 10073951 - 10074228
Alignment:
| Q |
8 |
aggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaaaaggagtatgggagccca |
107 |
Q |
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||||||||||||||||| || || | |||||| |||| ||||| | ||| |||||||| ||| || ||| | | |||||| |||| |||||| | || |
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| T |
10073951 |
aggatagtgcagaacagctgcgagtcatccttaacagcacaagatagccaatctaacaaatagctatgcaggtccatattaaagggagcatgggaacgca |
10074050 |
T |
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| Q |
108 |
aaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtcaag |
207 |
Q |
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| T |
10074051 |
aaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctctgcttcagaatgacataaagggcaggaggtgtctag |
10074150 |
T |
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| Q |
208 |
agcaataccttttctttgcagattggatcttgttgggaggatattcttagccagccgccacatgaaatttttaatctt |
285 |
Q |
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| T |
10074151 |
aacaatacctttcctctgttggttgtgtctatttgggagaatgttctttgccaagcgccacatgaagtttttgatctt |
10074228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 10136002 - 10136129
Alignment:
| Q |
8 |
aggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaaaaggagtatgggagccca |
107 |
Q |
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| T |
10136002 |
aggatagtgcagaacagctgcgagccatccttatcagcacaagatagccaatctaacaactagctatgcaggtccatattaaagggagcatggcaaccca |
10136101 |
T |
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| Q |
108 |
aaggcgaagcaaacaatgccagtttgga |
135 |
Q |
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| T |
10136102 |
aaggcgatgcaaacatagctagtttgga |
10136129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 10356660 - 10356533
Alignment:
| Q |
8 |
aggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaaaaggagtatgggagccca |
107 |
Q |
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||||||||||||||||| || || | |||||| |||| ||||| | ||| ||||||||| ||| || ||| | | |||||| |||| |||||| |||| |
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| T |
10356660 |
aggatagtgcagaacagctgcgagtcatccttaacagcacaagatagccaatctaacaactagctatgcaggtccatattaaagggagcatgggaaccca |
10356561 |
T |
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| Q |
108 |
aaggcgaagcaaacaatgccagtttgga |
135 |
Q |
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||||||| ||||||| || |||||||| |
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| T |
10356560 |
aaggcgatgcaaacatagctagtttgga |
10356533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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