View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13205_high_9 (Length: 212)

Name: NF13205_high_9
Description: NF13205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13205_high_9
NF13205_high_9
[»] chr1 (4 HSPs)
chr1 (1-199)||(11780115-11780313)
chr1 (6-178)||(10424593-10424765)
chr1 (8-178)||(1624838-1625008)
chr1 (95-154)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (1-190)||(17158540-17158730)
[»] chr6 (4 HSPs)
chr6 (1-196)||(14977619-14977814)
chr6 (1-63)||(11776308-11776370)
chr6 (7-63)||(9352421-9352477)
chr6 (15-63)||(24353638-24353686)
[»] chr5 (4 HSPs)
chr5 (1-178)||(5781902-5782079)
chr5 (1-178)||(19069420-19069597)
chr5 (69-166)||(17763963-17764060)
chr5 (6-63)||(11724701-11724758)
[»] chr2 (2 HSPs)
chr2 (109-196)||(12101983-12102070)
chr2 (1-63)||(12101880-12101942)
[»] chr3 (6 HSPs)
chr3 (6-173)||(16311632-16311799)
chr3 (6-173)||(18488416-18488583)
chr3 (6-173)||(18492626-18492793)
chr3 (6-144)||(16314023-16314161)
chr3 (6-144)||(18495017-18495155)
chr3 (1-158)||(19829018-19829175)
[»] chr8 (1 HSPs)
chr8 (6-162)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 11780313 - 11780115
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 100  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780313 atgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 11780214  T
Q  101 tgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcaagatgatgt 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11780213 tgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcacgatgatgt 11780115  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 178  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  8 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 107  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  108 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 178  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  95 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 154  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

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Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 17158730 - 17158540
Alignment:
Q  1 atgaagtgcattctgagagagtgg-agcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatg 99  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| | || ||||||||||    
T  17158730 atgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatg 17158631  T
Q  100 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagca 190  Q
    ||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||| ||||    
T  17158630 atgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgttaagca 17158540  T

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Target: chr6 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14977619 - 14977814
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 100  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||||| ||  ||||    
T  14977619 atgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctacgctatcttatga 14977718  T
Q  101 tgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcaagatga 196  Q
    |||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| |||| |||||    
T  14977719 tgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttagcatgatga 14977814  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11776370 - 11776308
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 63  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776370 atgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  7 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 63  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  15 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 63  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 5782079 - 5781902
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 100  Q
    |||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   || || || |||||    
T  5782079 atgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttacactttctgatga 5781980  T
Q  101 tgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 178  Q
    ||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781979 tgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 19069597 - 19069420
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 100  Q
    |||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   || || ||  ||||    
T  19069597 atgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttaccctttctaatga 19069498  T
Q  101 tgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 178  Q
    ||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069497 tgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  69 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 166  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 63  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 12101983 - 12102070
Alignment:
Q  109 ataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcaagatga 196  Q
    |||||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  12101983 ataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaattgttgagcacgatga 12102070  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12101880 - 12101942
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 63  Q
    |||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||    
T  12101880 atgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaacc 12101942  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 173  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 173  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 173  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtc 144  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtc 144  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19829175 - 19829018
Alignment:
Q  1 atgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatga 100  Q
    |||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || || |||||    
T  19829175 atgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttctgatga 19829076  T
Q  101 tgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 158  Q
    ||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829075 tgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  6 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 105  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  106 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 162  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

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