View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13205_low_3 (Length: 571)
Name: NF13205_low_3
Description: NF13205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13205_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 45217769 - 45217209
Alignment:
| Q |
1 |
tcatcacttggaattcaggtgcactcttctatgattcaaaaaccttcttatcaaacaccgtttttcggtttgtcacgttactgtggtccaaaccagtggc |
100 |
Q |
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| T |
45217769 |
tcatcacttggaattcaggtgcactcttctatgattcaaaaaccttcttatcaaacaccgtttttcggtttgtcacgttactgtggtccaaaccagtggc |
45217670 |
T |
|
| Q |
101 |
agaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccatacctacaagatc |
200 |
Q |
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| T |
45217669 |
agaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccatacctacaagatc |
45217570 |
T |
|
| Q |
201 |
agggaaattttctccaagaaaggtgcaaaatgtatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagcttgatttgtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45217569 |
agggaaattttctccaagaaaggtgcaaaatggatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagcttgacttgtcc |
45217470 |
T |
|
| Q |
301 |
ctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcactaa----tttgtctttgttataatgaattaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
45217469 |
ctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcactaaaagctgatattttgttataatgaattaa |
45217370 |
T |
|
| Q |
397 |
ttctcctttgctggtttaatgaaaattattagaagttaaaatccatcacacaattcaaatttgctttgtacactttggaggatatgaaatttcattggtt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217369 |
ttctcctttgctggtttaatgaaaattattagaagttaaaatccatcacacaattcaaatttgctttgtacactttggaggatatgaaatttcattggtt |
45217270 |
T |
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| Q |
497 |
ggtaatttttgttacaacattagttggtatactttgaaactaaatgcagccaaactttctg |
557 |
Q |
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| T |
45217269 |
ggtaatttttgttacaacattagttggtatactttgaaactaaatgcagccaaactttctg |
45217209 |
T |
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