View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13205_low_5 (Length: 384)
Name: NF13205_low_5
Description: NF13205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13205_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 14607975 - 14608269
Alignment:
| Q |
13 |
atatatacataacactcctaaaaatcaggaaatgagaaccatgaaagcaacattgtaggaaaggactttgtttatgaccataaatctaacaaactttgtt |
112 |
Q |
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| T |
14607975 |
atatatatataacactcctaaaaatcaggaaatgagaaccatgaaagcaacattgtaggaaaggactttgtttatgaccataaatctaacaaactttgtt |
14608074 |
T |
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| Q |
113 |
tgattgtcaatcaaagttctttaatctaacagtttttgttctcctaccaagaacaattttagccgttgttcttattcttcatggaatgtaagaaaatgat |
212 |
Q |
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| T |
14608075 |
tcattgtcaaccaaagttctttaatctaacagtttttgttctcctaccaagaacaaatttagccattgttcttattcttcatggaatgtaagaaaatgat |
14608174 |
T |
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| Q |
213 |
gggttttcaaattggatttggatagggtctaactgattccacaatggtaatttaagaaatctatataaatcatatttcttccacatgcataacat |
307 |
Q |
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| T |
14608175 |
gggttttcaaattggatttggatagggtctaactgattccacaatggtaatttaagaaatctatataaatcatatttcttccacatgcataacat |
14608269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 14608521 - 14608459
Alignment:
| Q |
302 |
taacatatcttccacttgatgttcttcttgcaaattttatacctggcttcccgcctccttgtt |
364 |
Q |
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| T |
14608521 |
taacatatcttccacttgatgttcttcttgcaaattttatacctggcttcccgcctccttgtt |
14608459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 14599934 - 14599975
Alignment:
| Q |
302 |
taacatatcttccacttgatgttcttcttgcaaattttatac |
343 |
Q |
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| T |
14599934 |
taacatatctcccactagatgttcttcttgcaaattttatac |
14599975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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