View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_high_1 (Length: 922)
Name: NF13206_high_1
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 836; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 19 - 922
Target Start/End: Original strand, 11779454 - 11780348
Alignment:
| Q |
19 |
gtatctgtgttaaaaatgcaaaagctgtgtttagtaaagtatgatggataaaaatagcatgctagactcactatgcttctgatgaagaaatggaagttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11779454 |
gtatctgtgttaaaaatgcaaaagctgtgtttagtaaagtatgatggataaaaatagcatgcta---------tgcttctgatgaagaaatggaagttca |
11779544 |
T |
|
| Q |
119 |
tggtattattaatacaaacgaagagaatagtggcattcatacggcaattttctcttatagaagagacacatcggaaagacggacatacaatatattacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779545 |
tggtattattaatacaaacgaagagaatagtggcattcatacggcagttttctcttatagaagagacacatcggaaagacggacatacaatatattacaa |
11779644 |
T |
|
| Q |
219 |
tacagtaataatatgcatctaaatcatgttttagattatataatgcccttattttcatcttcataattcaatgtcaaagtaaatatgatagaattcctac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779645 |
tacagtaataatatgcatctaaatcatgttttagattatataatacccttatttacatcttcataattcaatgtcaaagtaaatatgatagaattcctac |
11779744 |
T |
|
| Q |
319 |
gcgggccaatcttgcggtaggaacgtcttaccggcggaggctctacgtcattgtgctttttgtgaaaggttcgatgaattgtcatctaatttgttccttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11779745 |
gcgggccaatcttgcggtaggaacgtcttaccggaggaggctctacgtcattgtgctttttgtgaaaggttcgatgaatcgtcatctaatttgttccttc |
11779844 |
T |
|
| Q |
419 |
attgtgatgtcgcgttgagagtgtggcaaggtatcatgtgttggtgggagagtgtgatcattattccgtttagcttgttcaccctttgggagtgttggag |
518 |
Q |
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| T |
11779845 |
attgtgatgtcgcgttgagagtgtggcaaggtatcatgtgttggtgggagagtgtgatcgttattccgtttagcttgttcaccctttgggagtgttggag |
11779944 |
T |
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| Q |
519 |
tggtgtagagagggataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtggaaggcaaggaatgatagagtttttaat |
618 |
Q |
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| T |
11779945 |
tggtgtagagagggataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtggaaggcaaggaatgatagagtttttaat |
11780044 |
T |
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| Q |
619 |
ggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccccgtgtatgtactatg |
718 |
Q |
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| T |
11780045 |
ggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccccgtgtatgtactatg |
11780144 |
T |
|
| Q |
719 |
aatggttttggagcacaaagtattgtctattgcggctagtttaagaactgttgggtctgtttggttattaggactggggctgtgtctggtttagcattgg |
818 |
Q |
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| T |
11780145 |
aatggttttggagcccaaagtattgtctattgcggctagtttaagaactgttgggtctgtttggttattaggagtggggctgtgtctggtttagcattgg |
11780244 |
T |
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| Q |
819 |
cggaactgctaccagcatctgctttctgctgctgctttttgtgtctggctgctaaggcgcttcagttaggcctgctgctgttagttttgtttttctgtgc |
918 |
Q |
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| T |
11780245 |
cggaactgctaccagcatctgctttctgctgctgctgtttgtgtctggctgctaaggcgcttcagttaggcctgctgctgttagttttgtttttctgtgc |
11780344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 492 - 724
Target Start/End: Original strand, 24189439 - 24189659
Alignment:
| Q |
492 |
cttgttcaccctttgggagtgttggagtggtgtagagagggataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtgg |
591 |
Q |
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| T |
24189439 |
cttgttcgctctttgggagtgttggagtggtggcgagcagaataagagaattcgtaagggcctaagacttatttggcatgcaacggtgtgggtgttgtgg |
24189538 |
T |
|
| Q |
592 |
aaggcaaggaatgatagagtttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaa |
691 |
Q |
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| T |
24189539 |
attgcgaggaataatagagtgtttaatagccagaacccgga------------tgtggatgacatcaaggtcttgtcgtggcgatggtctttggatagaa |
24189626 |
T |
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| Q |
692 |
tttctatgcccccgtgtatgtactatgaatggt |
724 |
Q |
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| T |
24189627 |
tctctatgcctccgtgtatgtactatgaatggt |
24189659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 533 - 761
Target Start/End: Original strand, 28571695 - 28571923
Alignment:
| Q |
533 |
ataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtggaaggcaaggaatgatagagtttttaatggccggaatccgga |
632 |
Q |
| |
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|||||| ||| |||||||| || |||| |||||||| |||||| |||||| |||||||| || ||||| ||| ||| |||||| |||||| ||||| |
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| T |
28571695 |
ataagaaaatttgtaagggcctaagactcatttggcatgcaacgatgtgggtgttgtggattgcgaggaacaataaagtgtttaatacccggaacccgga |
28571794 |
T |
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| Q |
633 |
tgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccccgtgtatgtactatgaatggttttggagc |
732 |
Q |
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| T |
28571795 |
tgtggacgaaattgtgcatgacatcaagattttgccgtggcgttggtctttgtagagaatccctatgcctacgtgcatgtactatgaatggtgttggtgc |
28571894 |
T |
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| Q |
733 |
acaaagtattgtctattgcggctagttta |
761 |
Q |
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| T |
28571895 |
tcaacggaatgtcttttgcggctggttta |
28571923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 611 - 730
Target Start/End: Original strand, 31225302 - 31225421
Alignment:
| Q |
611 |
tttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgcccccgtgtat |
710 |
Q |
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|||||||| ||| |||| |||||||| |||||||||||| || || ||||| | ||||||||| ||| |||||| |||||| ||| ||||||||||| |
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| T |
31225302 |
tttttaataaccgaaatctggatgtgggagaaattgtggatgaaatcaaggtgttgtcgtggcggtgggctttggttagaattaatattcccccgtgtat |
31225401 |
T |
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| Q |
711 |
gtactatgaatggttttgga |
730 |
Q |
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| T |
31225402 |
gtacttcaaatggttttgga |
31225421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 587 - 730
Target Start/End: Original strand, 35400749 - 35400892
Alignment:
| Q |
587 |
tgtggaaggcaaggaatgatagagtttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttgga |
686 |
Q |
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| T |
35400749 |
tgtggaaagcgaggaatgataaggtttttaataaccgaaatccgtatgtgggtgaaatggtggatgatgtcaaggttttgtcttggagatgggctttgga |
35400848 |
T |
|
| Q |
687 |
cagaatttctatgcccccgtgtatgtactatgaatggttttgga |
730 |
Q |
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| T |
35400849 |
tagaatctctatgccaccgtgtatgtattacgaatggtgttgga |
35400892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 670 - 730
Target Start/End: Complemental strand, 12825411 - 12825351
Alignment:
| Q |
670 |
tggcgttggtctttggacagaatttctatgcccccgtgtatgtactatgaatggttttgga |
730 |
Q |
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||||| ||||| ||||| |||||||||||||| || |||||||| |||||||||| ||||| |
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| T |
12825411 |
tggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttgga |
12825351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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