View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13206_high_11 (Length: 389)

Name: NF13206_high_11
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13206_high_11
NF13206_high_11
[»] chr7 (2 HSPs)
chr7 (1-373)||(1808192-1808564)
chr7 (10-78)||(46987086-46987149)
[»] chr5 (4 HSPs)
chr5 (8-78)||(6624774-6624839)
chr5 (3-43)||(18619029-18619069)
chr5 (8-80)||(32200443-32200510)
chr5 (8-76)||(37932328-37932391)
[»] chr6 (3 HSPs)
chr6 (293-366)||(7386872-7386945)
chr6 (9-42)||(15869132-15869165)
chr6 (10-78)||(655747-655810)
[»] chr8 (2 HSPs)
chr8 (8-80)||(11708984-11709051)
chr8 (8-75)||(13575287-13575349)
[»] chr4 (5 HSPs)
chr4 (4-43)||(21317366-21317405)
chr4 (10-80)||(19908692-19908757)
chr4 (8-77)||(38453263-38453327)
chr4 (8-76)||(20799394-20799457)
chr4 (8-80)||(22630356-22630423)
[»] chr1 (5 HSPs)
chr1 (8-75)||(7484691-7484757)
chr1 (8-85)||(21400014-21400086)
chr1 (9-78)||(47528445-47528509)
chr1 (8-80)||(17139513-17139580)
chr1 (11-75)||(34083637-34083700)
[»] chr2 (4 HSPs)
chr2 (8-78)||(7206123-7206188)
chr2 (8-77)||(20565074-20565138)
chr2 (8-80)||(31815883-31815950)
chr2 (7-43)||(43484693-43484729)
[»] chr3 (1 HSPs)
chr3 (4-80)||(10922304-10922375)


Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1808192 - 1808564
Alignment:
Q  1 taagttttcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgacaccacnnnnnnnnnttaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||          |||||    
T  1808192 taagttttcgtgagcttagctcagttggcagtgacaatgcatatcataatatatgcaagttccgaggttcgaaccccggcaccacaaaaaaataataata 1808291  T
Q  101 catgctataagttagtggccaaattacatgtgacactgtaaaccttgataatgcagcttttgtttgcagataaatgtggtaaaaatgcatacacaactag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808292 catgctataagttagtggccaaattacatgtgacactgtaaaccttgataatgcagcttttgtttgcagataaatgtggtaaaaatgcatacacaactag 1808391  T
Q  201 attactttgaagagtatcaacaacgattaacgactttaatcggcggttcgcggactagaagacttgttaataaagcattgtttcttatgacagttggagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808392 attactttgaagagtatcaacaacgattaacgactttaatcggcggttcgcggactagaagacttgttaataaagcattgtttcttatgacagttggagg 1808491  T
Q  301 caatgattttgtaaacaactattaccttgtaccttcttcttcaaggtctcgccaatatccattaccacactat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808492 caatgattttgtaaacaactattaccttgtaccttcttcttcaaggtctcgccaatatccattaccacactat 1808564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 46987086 - 46987149
Alignment:
Q  10 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 78  Q
    ||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||||    
T  46987086 gtgagcttagctcagttggtaaggacaatgcata-----atatatgcaaggtccggggttcgaaccccg 46987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 6624774 - 6624839
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 78  Q
    |||||||||||||||||||||||  |||||||||||     ||||||||||| |||| |||||||||||||    
T  6624774 tcgtgagcttagctcagttggcatggacaatgcata-----atatatgcaaggtccggggttcgaaccccg 6624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 18619029 - 18619069
Alignment:
Q  3 agttttcgtgagcttagctcagttggcagtgacaatgcata 43  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  18619029 agttctcgtgagcttagctcagctggcagagacaatgcata 18619069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 32200510 - 32200443
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    |||||||||||||||||||| ||| |||||||||||     ||||||||||| |||| ||||| | |||||||    
T  32200510 tcgtgagcttagctcagttgacagggacaatgcata-----atatatgcaaggtccggggttcaagccccgac 32200443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 37932328 - 37932391
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccc 76  Q
    ||||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||    
T  37932328 tcgtgagcttagctcagttggtatggacaatgcata-----atatatgcaaggtccggggttcgaaccc 37932391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 7386945 - 7386872
Alignment:
Q  293 gttggaggcaatgattttgtaaacaactattaccttgtaccttcttcttcaaggtctcgccaatatccattacc 366  Q
    ||||| |||||||||||||| || ||||| ||| | || |||| |||| |||||||||| ||||||||||||||    
T  7386945 gttggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcgtcaatatccattacc 7386872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 15869165 - 15869132
Alignment:
Q  9 cgtgagcttagctcagttggcagtgacaatgcat 42  Q
    |||||||||||||||||||||||||||| |||||    
T  15869165 cgtgagcttagctcagttggcagtgacattgcat 15869132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 655810 - 655747
Alignment:
Q  10 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 78  Q
    ||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||||    
T  655810 gtgagcttagctcagttggtatcgacaatgcata-----atatatgcaaggtccggggttcgaaccccg 655747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 11708984 - 11709051
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| ||||| |||| |||||||||    
T  11708984 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccgaagttcaaaccccgac 11709051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 13575287 - 13575349
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 75  Q
    ||||||| ||||||||||||| || |||||||||||     | |||||||||||||||||||||||||    
T  13575287 tcgtgagtttagctcagttggtagggacaatgcata-----acatatgcaagttccgaggttcgaacc 13575349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 21317405 - 21317366
Alignment:
Q  4 gttttcgtgagcttagctcagttggcagtgacaatgcata 43  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  21317405 gttttcgtgagcttagctcagttggtagagacaatgcata 21317366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 19908692 - 19908757
Alignment:
Q  10 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    ||||||||| ||||||||| |  |||||||||||     ||||||||||| ||||||||||||||||||||    
T  19908692 gtgagcttaactcagttggtaaggacaatgcata-----atatatgcaaggtccgaggttcgaaccccgac 19908757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 38453263 - 38453327
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacccc 77  Q
    |||||||||||||||||||||||  |||||||||||     ||||||||||| |||  ||||||||||||    
T  38453263 tcgtgagcttagctcagttggcatggacaatgcata-----atatatgcaaggtccagggttcgaacccc 38453327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 20799457 - 20799394
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccc 76  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||    
T  20799457 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaaccc 20799394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 22630423 - 22630356
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    ||||||| ||| ||||||||| ||||||||||||||     ||||||||||| || ||||||| |||||||||    
T  22630423 tcgtgagattatctcagttggtagtgacaatgcata-----atatatgcaaggtctgaggttcaaaccccgac 22630356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 7484757 - 7484691
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 75  Q
    ||||||||||||||||| ||| || |||||||||||  || ||||||||||| |||||||||| ||||    
T  7484757 tcgtgagcttagctcagctggtagagacaatgcataatat-atatatgcaaggtccgaggttcaaacc 7484691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 21400086 - 21400014
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgacaccac 85  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| ||   ||||||||||| ||||||||    
T  21400086 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtcttgggttcgaaccctgacaccac 21400014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 47528509 - 47528445
Alignment:
Q  9 cgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 78  Q
    |||||||||||||||||||| |  |||||||||||     ||||| ||||| ||||||||||||||||||    
T  47528509 cgtgagcttagctcagttggtaaggacaatgcata-----atatacgcaaggtccgaggttcgaaccccg 47528445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 17139580 - 17139513
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    ||||||||||||||||||||| || |||||||||||     |||||| |||| |||| ||||| |||||||||    
T  17139580 tcgtgagcttagctcagttggtagggacaatgcata-----atatattcaaggtccggggttcaaaccccgac 17139513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 34083700 - 34083637
Alignment:
Q  11 tgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 75  Q
    |||||||| ||||||||| || |||||||||||| || ||||||| ||| |||| ||||||||||    
T  34083700 tgagcttaactcagttggtagggacaatgcatat-ataatatatgtaaggtccggggttcgaacc 34083637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 7206123 - 7206188
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 78  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||||||||  |||||||    
T  7206123 tcgtgagcttagctcagttggtagagacaatgcata-----atatatgcaaggtccgaggtttaaaccccg 7206188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 20565138 - 20565074
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacccc 77  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||| ||||| ||||||    
T  20565138 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaacccc 20565074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 31815950 - 31815883
Alignment:
Q  8 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    ||||||||||| ||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||||||    
T  31815950 tcgtgagcttaactcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaaccccgac 31815883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 43484729 - 43484693
Alignment:
Q  7 ttcgtgagcttagctcagttggcagtgacaatgcata 43  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  43484729 ttcgtaagcttagctcagttggcagagacaatgcata 43484693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 10922375 - 10922304
Alignment:
Q  4 gttttcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 80  Q
    |||| |||||||||| ||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||||||    
T  10922375 gtttgcgtgagcttaactcagttggtagggacaatgcata-----atatatgcaagatccggggttcaaaccccgac 10922304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University