View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_high_13 (Length: 368)
Name: NF13206_high_13
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 355
Target Start/End: Original strand, 2270717 - 2271057
Alignment:
| Q |
24 |
tttaagttgaactcacttttacaaaata-tgatttaatttctctatcacgtaatcaaatgcaaaaattgatttttaaaactaagtcgaataaaattaaat |
122 |
Q |
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| T |
2270717 |
tttaagttgaactcatttttacaaaaaaatgatttaatttctctatcacttaatcaaatgcaaaaattgatttttaagactaagttgaataaaattaaat |
2270816 |
T |
|
| Q |
123 |
tgaaaccgtttacattcaacttcgtttttaattaattcaaaatcaatttttgttacctcataaacaagcatacacttcatcacctaatcaaactttaatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2270817 |
tgaaaccgtttacattcaacttcgtttttaattaattcaaaatcaatttttgttacctcataaacaaacatacacttcatcacctaatcaaactttaatt |
2270916 |
T |
|
| Q |
223 |
tgaagtaaaatcaacaagtttgtgtttgattattttttggtgattactctccagtattcgggaaaatgagttaaggtaatttaga--------gagaagt |
314 |
Q |
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| T |
2270917 |
tgaagtaaaatcaacaagtttgtgtttgattattttttggtgataactctccagtattcggaaaaataagttatggtaatttagagttcgactgagaagt |
2271016 |
T |
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| Q |
315 |
aaataaagnnnnnnnaaaatttatctttgctagaacttatt |
355 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
2271017 |
aaataaagtttttttaaaatttatctttgctagaacttatt |
2271057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 2270516 - 2270607
Alignment:
| Q |
169 |
tttttgttacctcataaacaagcatacacttcatcacctaatcaaactttaatttgaagtaaaatcaacaagtttgtgtttgattatttttt |
260 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||| ||||||||| ||| |||||| |||||||||| ||||| |||||| |
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| T |
2270516 |
tttttgttacttcataaacaagcatgcatttcatcacctaatcaaaccttaatttgaggtataatcaataagtttgtgtatgattctttttt |
2270607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 46548022 - 46547989
Alignment:
| Q |
152 |
aattaattcaaaatcaatttttgttacctcataa |
185 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
46548022 |
aattaattcaaaatcaatttttgttaccgcataa |
46547989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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