View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_high_14 (Length: 356)
Name: NF13206_high_14
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 3625409 - 3625054
Alignment:
| Q |
1 |
atgcaaagtgaaatagtcgattaattacatatgaccagagtatgaaaataaacttaaccataagtctaggcattaatgttcatacatggtttaaaacatg |
100 |
Q |
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| T |
3625409 |
atgcaaagcgaaatagtcgattaattacatatgaccagagtatgaatataaacttaaccataagtctaggcattaatgttcatacatggtttaaaacatg |
3625310 |
T |
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| Q |
101 |
tccctcaaataataaatcggtgtctcacatttgctaaatcaaaatattgtttgttgattgcacatcggcaaaaatgcagattcgttgattgaaatcctgt |
200 |
Q |
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| T |
3625309 |
tcccttaaataataaatcgatgtctcgcatttgctaaatcaaaatatcgtttgttgattgcacgtcgacaaaagtgcaaattcgttgattgaaatcttgt |
3625210 |
T |
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| Q |
201 |
ttacttagcaaatcgagattttgtcactcagagagaatagtcagctggtcttcgacgcaatcactaaatcaatttaattcattgggtgaagtgtttctta |
300 |
Q |
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| T |
3625209 |
ttacttagcaaatcgagattttgtcactcagaaggaacagtcagctggtcttcgactcaatcactaaatcaacttaattcgtt-ggtgaagtgtttcttg |
3625111 |
T |
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| Q |
301 |
tccaacaaagttgctatagc-ttttctccctataactctcttagattgctcgccttc |
356 |
Q |
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| T |
3625110 |
tccaacgaagttgctatagctttttctccctttaactctcttagatttctcgccttc |
3625054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 8934165 - 8934033
Alignment:
| Q |
41 |
tatgaaaataaacttaaccataagtctaggcattaatgttcatacatggtttaaaacatgtccctcaaataataaatcggtgtctcacatttgctaaatc |
140 |
Q |
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| T |
8934165 |
tatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaatc |
8934066 |
T |
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| Q |
141 |
aaaatattgtttgttgattgcacatcggcaaaa |
173 |
Q |
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| T |
8934065 |
aaaatatcgtttttggattgcacatcgacaaaa |
8934033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 34049247 - 34049196
Alignment:
| Q |
122 |
gtctcacatttgctaaatcaaaatattgtttgttgattgcacatcggcaaaa |
173 |
Q |
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| T |
34049247 |
gtctcacacttgctaaatcaaaatattgtttgcagattgcacgtcgacaaaa |
34049196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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