View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13206_high_23 (Length: 262)
Name: NF13206_high_23
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34835455 - 34835699
Alignment:
| Q |
1 |
gacgtcgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34835455 |
gacgccgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttc |
34835554 |
T |
|
| Q |
101 |
aacaaatgaatcaattgaaatcatcttgatcttaataaattgaagnnnnnnngtgtaaagcatgaaatgtacttacagaagcccatctataaacaattgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34835555 |
aacaaatgaatcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaagcatgaaatgtacttacagaagcccatctataaacaattgg |
34835654 |
T |
|
| Q |
201 |
gaaaccttgaagaaagatttcatgaaacaatgagtgtcccttttg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34835655 |
gaaaccttgaagaaagatttcatgaaacaatgagtgtcccttttg |
34835699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 34821372 - 34821447
Alignment:
| Q |
160 |
gcatgaaatgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagt |
235 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
34821372 |
gcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatgagt |
34821447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 35335534 - 35335468
Alignment:
| Q |
167 |
atgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatga |
233 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| ||| || || ||||||||||| |
|
|
| T |
35335534 |
atgtacttacaggagcccatctataaacaattgggaagccttgtgaaaatatctcctgaaacaatga |
35335468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 35336366 - 35336285
Alignment:
| Q |
21 |
attgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttcaa |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || ||||||||| || |||||||||| | ||||||||||||| |
|
|
| T |
35336366 |
attgtgttccatgcataatcaaatgtactaagcagctgtgattctgttctcagggcatctccctcattttgcatctgttcaa |
35336285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University