View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13206_high_26 (Length: 241)
Name: NF13206_high_26
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 6633889 - 6633683
Alignment:
| Q |
13 |
atgaaacatattgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgt |
112 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6633889 |
atgaaacatattgtgttccaaagaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgt |
6633790 |
T |
|
| Q |
113 |
cagcacataatatatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6633789 |
cagcacataatatatttcccttttgagctttgt---tgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgc |
6633693 |
T |
|
| Q |
213 |
tatgaatact |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
6633692 |
tatgaatact |
6633683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 6807904 - 6807698
Alignment:
| Q |
13 |
atgaaacatattgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgt |
112 |
Q |
| |
|
||||||||| |||||||| || ||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||| || ||| || || |
|
|
| T |
6807904 |
atgaaacatgttgtgttccaataaaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgt |
6807805 |
T |
|
| Q |
113 |
cagcacataatatatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgc |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
6807804 |
tagcacataatatatttcctttttgagctttgt---tgttctcttcaacagacctaacaccaccgggtggacttattgccatttaaaatgttaatgttgc |
6807708 |
T |
|
| Q |
213 |
tatgaatact |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
6807707 |
tatgaatact |
6807698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 6835843 - 6835759
Alignment:
| Q |
13 |
atgaaacatattgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagct |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| || |||| | ||||||||||||| |
|
|
| T |
6835843 |
atgaaacatattgtgttccaaaaaaggaagtcagcatagtcatcagggtatacaatggctaagacagcattacccggacatagct |
6835759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 6835691 - 6835636
Alignment:
| Q |
165 |
cctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaata |
220 |
Q |
| |
|
|||||| |||||||||||| |||| || |||||||| |||| |||||||||||||| |
|
|
| T |
6835691 |
cctaacgccaccgggtggatttatagccatttgaaacgttattgttgctatgaata |
6835636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University