View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_high_28 (Length: 239)
Name: NF13206_high_28
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 21868099 - 21868324
Alignment:
| Q |
1 |
tagcaaatttggagttgaagcttgcttaattgtgtatgatggtgatggtagactattgacttggccgcaaaactccatcgatgtacaatccattcttaaa |
100 |
Q |
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| T |
21868099 |
tagcaaatttggagttgaagcttgcttaattgtgtatgatggtgatggtagactattgacttggccgcaaaactccatcgttgtacaatccattcttaaa |
21868198 |
T |
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| Q |
101 |
acgtacgagcttcaaaagattgagacaactccgaagatctttgatgtgaaggactattttgcaaataagaagaataaggttgaaggtgagatttccaaag |
200 |
Q |
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| T |
21868199 |
acgtacgagcttcaaaagattgagacaactccgaagatctttgatgtgaaggactattttgcaaataagaagaataaggttgaaggtgagatttccaaag |
21868298 |
T |
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| Q |
201 |
tgcacaaagagattgtgatgaaaatg |
226 |
Q |
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| T |
21868299 |
tgcacaaagagattgtgatgaaaatg |
21868324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 21819203 - 21819119
Alignment:
| Q |
134 |
aagatctttgatgtgaaggactattttgcaaataagaagaataaggttgaaggtgagatttccaaagtgcacaaagagattgtga |
218 |
Q |
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| T |
21819203 |
aagatctttgatgtgaaggactattttgcaaataagaagaataagattgaaggtgagatttccaaagtgcagaaagagattgtga |
21819119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 21876106 - 21876197
Alignment:
| Q |
135 |
agatctttgatgtgaaggactattttgcaaataagaagaataaggttgaaggtgagatttccaaagtgcacaaagagattgtgatgaaaatg |
226 |
Q |
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| T |
21876106 |
agatctttgatgtgaaagactattttgaaaataagaagaataagattgaaagtgagatttccaaagtacacaaagagatcttgatgaaaatg |
21876197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 44260210 - 44260282
Alignment:
| Q |
112 |
tcaaaagattgagacaactccgaagatctttgatgtgaaggactattttgcaaataagaagaataaggttgaa |
184 |
Q |
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| T |
44260210 |
tcaaaagattgagaaaactcctaagatatttgatgtcaaggactactttgaaaataagaaagaaaaggttgaa |
44260282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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