View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_high_7 (Length: 458)
Name: NF13206_high_7
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 31697189 - 31697540
Alignment:
| Q |
10 |
acatcatcaaaagaaataaaggaaacaggaaatagctagttgaggctgcatatgaaatttgaatacgtctacaatggtacccagctcagaaatacttctg |
109 |
Q |
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| T |
31697189 |
acatcataaaaggaaataaaggaaacaggaaatagctagttgaggc---atatgaaatttgaatacgtctacaatggtacccagctcggaaatacttctg |
31697285 |
T |
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| Q |
110 |
tatccacgatcctccactaaagtaggacactcttcatcttcaatatcatcaaaataaacaaacttgtcctcaatggccttaagttttttctcctcttttg |
209 |
Q |
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| T |
31697286 |
tgtccacgatcctccactaaagtaggacactcttcatcttcaatatcatcaaaataaacaaacttgtcctcaatggccttaagttttttctcctctttgg |
31697385 |
T |
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| Q |
210 |
taagaaccctatcacagctaaagtctttcaccataacaatttcatctttgtatgtactcgtatttgtatctaatagacaagcagagaaacaatccttagc |
309 |
Q |
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| T |
31697386 |
taagaaccctatcacagctaaagtctttcaccataacaatttcatctttgaatgtactcgtatttgtatctaatagacaagtagagaaacaatccttagt |
31697485 |
T |
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| Q |
310 |
ataattaaatttgtacaagaatatatagtaatattatggaacatatgttaaactg |
364 |
Q |
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| T |
31697486 |
ataattaaatttgtacaagaatatataataatattattgaacatatgttaaactg |
31697540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 31697580 - 31697626
Alignment:
| Q |
390 |
atcaccagcgacagcaggtgctggtgctggacgaactccggcttccg |
436 |
Q |
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| T |
31697580 |
atcagcagtgacagcaggtgctggtgctggacgaactccggcttccg |
31697626 |
T |
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