View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13206_high_8 (Length: 453)

Name: NF13206_high_8
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13206_high_8
NF13206_high_8
[»] chr2 (2 HSPs)
chr2 (92-217)||(17988507-17988632)
chr2 (413-453)||(20509248-20509288)
[»] chr6 (19 HSPs)
chr6 (80-217)||(27599370-27599508)
chr6 (77-218)||(26808215-26808357)
chr6 (266-401)||(26808377-26808524)
chr6 (104-180)||(26974236-26974311)
chr6 (322-400)||(26851510-26851588)
chr6 (80-129)||(26910500-26910549)
chr6 (326-410)||(26061552-26061636)
chr6 (326-410)||(26081522-26081606)
chr6 (414-453)||(21146964-21147003)
chr6 (149-180)||(26910553-26910584)
chr6 (359-401)||(25077032-25077074)
chr6 (251-320)||(25080206-25080273)
chr6 (323-401)||(25080288-25080366)
chr6 (253-315)||(26910639-26910701)
chr6 (323-400)||(26638387-26638464)
chr6 (323-400)||(26744353-26744430)
chr6 (354-395)||(27662480-27662521)
chr6 (369-401)||(27659451-27659483)
chr6 (413-453)||(33638921-33638960)
[»] chr8 (7 HSPs)
chr8 (407-453)||(3479025-3479071)
chr8 (413-453)||(3785932-3785972)
chr8 (413-445)||(15232220-15232252)
chr8 (413-453)||(19472624-19472664)
chr8 (413-453)||(19543549-19543589)
chr8 (413-453)||(19589107-19589147)
chr8 (412-453)||(31909241-31909282)
[»] scaffold0016 (1 HSPs)
scaffold0016 (413-453)||(48375-48415)
[»] chr7 (5 HSPs)
chr7 (413-453)||(26389160-26389200)
chr7 (412-453)||(18446569-18446610)
chr7 (413-453)||(1773701-1773741)
chr7 (413-453)||(2576966-2577006)
chr7 (413-453)||(26387892-26387932)
[»] chr5 (2 HSPs)
chr5 (412-453)||(18587513-18587554)
chr5 (413-453)||(4215219-4215258)
[»] chr1 (2 HSPs)
chr1 (413-453)||(12685086-12685126)
chr1 (420-453)||(16385556-16385589)
[»] chr4 (1 HSPs)
chr4 (413-453)||(46432428-46432468)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 17988632 - 17988507
Alignment:
Q  92 gttgcaaaaatctttaataaatctttagcttttgatatcaataaaagttttattggctgccctatctgattgtgtaaattaagatttggctatagcaagg 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||    
T  17988632 gttgcaacaatctttaataaatctttagcttttgatatcaatacaagctttattagcttccctatctgattgtgtaaattaagatttggctattgcaagg 17988533  T
Q  192 gtgcatggaagaatagagaatagaga 217  Q
    ||||||||||| || |||||||||||    
T  17988532 gtgcatggaaggattgagaatagaga 17988507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 20509288 - 20509248
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagtta 20509248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 27599508 - 27599370
Alignment:
Q  80 tatataaatgatgttgcaaaaatctttaataaatctttagcttttgatatcaataaaagttttattggctgccctatctgattgtgtaaa-ttaagattt 178  Q
    ||||| ||||||||||||| ||||||| |||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||||| |||||||||    
T  27599508 tatattaatgatgttgcaacaatctttgataaatctatagcttttgaaatcaatacaagatttattggctgtcctatctgattgtgtaaatttaagattt 27599409  T
Q  179 ggctatagcaagggtgcatggaagaatagagaatagaga 217  Q
    | |||| ||||||||| | ||||| ||||||||||||||    
T  27599408 gactattgcaagggtgaacggaaggatagagaatagaga 27599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 218
Target Start/End: Original strand, 26808215 - 26808357
Alignment:
Q  77 gaatatataaatgatgttgcaaaaatcttt-aataaatctttagcttttgatatcaataaaagttttattggctgccctatctgattgtgtaaattaaga 175  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||||||||| ||| |||  || ||||||| ||| |||| |||||| |  |||||||||    
T  26808215 gaatatataaaagatgttgctacaatcttttaataaatctttagcttttgacatctataccagctttattgtctggcctaactgatttttaaaattaaga 26808314  T
Q  176 tttggctatagcaagggtgcatggaagaatagagaatagagag 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  26808315 tttggctattgcaagggtgcatggaagaatagagaatagagag 26808357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 26808377 - 26808524
Alignment:
Q  266 atatttaaaggcctcatacaacttatatcctaattcatagtgtaatattttttatacaa------------ctacatgaggctgtatgcaccaatacttg 353  Q
    ||||||||| |||| |||||||||||| ||||||||||||||| |||||||| || | |            |||||||||||||||| |||||||| |||    
T  26808377 atatttaaaagccttatacaacttataccctaattcatagtgttatatttttgatgctaaactaacagaacctacatgaggctgtatccaccaatatttg 26808476  T
Q  354 tttgtcaacctgaacagaggggatttcagattggttcgagcaccaaat 401  Q
    |||| |||   |||||||||||||| ||||||||||||||||||||||    
T  26808477 tttgccaaaaagaacagaggggattccagattggttcgagcaccaaat 26808524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 26974236 - 26974311
Alignment:
Q  104 tttaataaatctttagcttttgatatcaataaaagttttattggctgccctatctgattgtgtaaattaagatttgg 180  Q
    |||||| |||||||||| |||||||||| ||||||||| ||||| ||| |||||| ||| |||||||||| ||||||    
T  26974236 tttaattaatctttagc-tttgatatcattaaaagtttgattggttgcactatctaattatgtaaattaatatttgg 26974311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 26851510 - 26851588
Alignment:
Q  322 caactacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaa 400  Q
    ||||||||||| |||| ||| ||||||| |  |||| ||| | ||||||| |||||| |||||||||||||||||||||    
T  26851510 caactacatgacgctggatgtaccaatattattttgccaagcggaacagaagggattccagattggttcgagcaccaaa 26851588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 26910500 - 26910549
Alignment:
Q  80 tatataaatgatgttgcaaaaatctttaataaatctttagcttttgatat 129  Q
    |||||||||||| ||| |  ||||||||||||||||||||||||||||||    
T  26910500 tatataaatgatattgaagcaatctttaataaatctttagcttttgatat 26910549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 26061552 - 26061636
Alignment:
Q  326 tacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaataacgagaca 410  Q
    ||||||||| |  ||||||||||| ||||||  ||||  |||||||||||||| ||||||||||  |||||||||| ||| ||||    
T  26061552 tacatgaggatagatgcaccaatatttgttttccaacaggaacagaggggattccagattggttaaagcaccaaatcacgggaca 26061636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 26081522 - 26081606
Alignment:
Q  326 tacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaataacgagaca 410  Q
    ||||||||| |  ||||||||||| ||||||  ||||  |||||||||||||| ||||||||||  |||||||||| ||| ||||    
T  26081522 tacatgaggatagatgcaccaatatttgttttccaacaggaacagaggggattccagattggttaaagcaccaaatcacgggaca 26081606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 453
Target Start/End: Complemental strand, 21147003 - 21146964
Alignment:
Q  414 gttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagtta 21146964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 180
Target Start/End: Original strand, 26910553 - 26910584
Alignment:
Q  149 tgccctatctgattgtgtaaattaagatttgg 180  Q
    ||||||||||||||||||||||||||||||||    
T  26910553 tgccctatctgattgtgtaaattaagatttgg 26910584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 25077032 - 25077074
Alignment:
Q  359 caacctgaacagaggggatttcagattggttcgagcaccaaat 401  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||    
T  25077032 caaccagaaaagaggggattccagattggttcgagcaccaaat 25077074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 25080206 - 25080273
Alignment:
Q  251 ccatgtccatatctgatatttaaaggcctcatacaacttatatcctaattcatagtgtaatattttttat 320  Q
    |||||| ||||||||||||||| | | || |||  |||||| ||||||||||||||||||||||| ||||    
T  25080206 ccatgtacatatctgatatttagaagacttata--acttatttcctaattcatagtgtaatatttcttat 25080273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 25080288 - 25080366
Alignment:
Q  323 aactacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaat 401  Q
    ||||||||||||||  | || | |||| ||| ||| ||||  ||||||||||||||  |||||||||||||||||||||    
T  25080288 aactacatgaggctagaagcgcgaatatttgattgccaactggaacagaggggattctagattggttcgagcaccaaat 25080366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 26910639 - 26910701
Alignment:
Q  253 atgtccatatctgatatttaaaggcctcatacaacttatatcctaattcatagtgtaatattt 315  Q
    |||| ||||||||| ||||||| || | ||||||||||| |||| ||||| ||||||||||||    
T  26910639 atgtgcatatctgaaatttaaaagcgttatacaacttatttcctcattcacagtgtaatattt 26910701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 26638387 - 26638464
Alignment:
Q  323 aactacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaa 400  Q
    |||||||||| |||| ||||||  ||| | ||||  ||||| ||||||||| |||| |||||||||||||||| ||||    
T  26638387 aactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaa 26638464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 26744353 - 26744430
Alignment:
Q  323 aactacatgaggctgtatgcaccaatacttgtttgtcaacctgaacagaggggatttcagattggttcgagcaccaaa 400  Q
    |||||||||| |||| ||||||  ||| | ||||  ||||| ||||||||| |||| |||||||||||||||| ||||    
T  26744353 aactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaa 26744430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 27662521 - 27662480
Alignment:
Q  354 tttgtcaacctgaacagaggggatttcagattggttcgagca 395  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  27662521 tttgccaaccggaacagaggggattccagattggttcgagca 27662480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 27659483 - 27659451
Alignment:
Q  369 agaggggatttcagattggttcgagcaccaaat 401  Q
    |||||||||| ||||||||||||||||||||||    
T  27659483 agaggggattccagattggttcgagcaccaaat 27659451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 33638960 - 33638921
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  33638960 tgttgaaatatagg-agttatacttattttagagttagtta 33638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 3479025 - 3479071
Alignment:
Q  407 gacatatgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  3479025 gacatatgttgaaatatagatagttatactcattttagagttagtta 3479071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 3785972 - 3785932
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  3785972 tgttgaaatatagatagtgatactcattttagagttagtta 3785932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 15232220 - 15232252
Alignment:
Q  413 tgttgaaatataggtagttatactcattttaga 445  Q
    |||||||||||||||||||||||||||||||||    
T  15232220 tgttgaaatataggtagttatactcattttaga 15232252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 19472664 - 19472624
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  19472664 tgttgaaatatagatagtaatactcattttagagttagtta 19472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 19543589 - 19543549
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  19543589 tgttgaaatatagatagtaatactcattttagagttagtta 19543549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 19589107 - 19589147
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  19589107 tgttgaaatatagatagtaatactcattttagagttagtta 19589147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 31909282 - 31909241
Alignment:
Q  412 atgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  31909282 atgttgaaatatagatagtaatactcattttagagtaagtta 31909241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 48375 - 48415
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48375 tgttgaaatataggtagttatactcattttagagttagtta 48415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 26389160 - 26389200
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26389160 tgttgaaatataggtagttatactcattttagagttagtta 26389200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 18446569 - 18446610
Alignment:
Q  412 atgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  18446569 atgttgaaatatagttagttatactcattttagagttagtta 18446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 1773741 - 1773701
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1773741 tgttgaattataggtagttatactcattttagagttagtta 1773701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 2576966 - 2577006
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  2576966 tgttgaaatatagatagtgatactcattttagagttagtta 2577006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 26387892 - 26387932
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  26387892 tgttgaaatataagtagttatactcattttaaagttagtta 26387932  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 18587554 - 18587513
Alignment:
Q  412 atgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18587554 atgttgaaatataggtagttatacttattttagagttagtta 18587513  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 4215219 - 4215258
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  4215219 tgttgaaatatagttagttatactca-tttagagttagtta 4215258  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 12685086 - 12685126
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  12685086 tgttgaaatatagttagttatactcattttagagttagtta 12685126  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 16385556 - 16385589
Alignment:
Q  420 atataggtagttatactcattttagagttagtta 453  Q
    |||||| |||||||||||||||||||||||||||    
T  16385556 atatagatagttatactcattttagagttagtta 16385589  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 46432428 - 46432468
Alignment:
Q  413 tgttgaaatataggtagttatactcattttagagttagtta 453  Q
    |||| |||| ||| |||||||||||||||||||||||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagtta 46432468  T

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